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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS04025 [old locus tag: SACOL0783 ]
  • pan locus tag?: SAUPAN002610000
  • symbol: SACOL_RS04025
  • pan gene symbol?: opuBB
  • synonym:
  • product: ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS04025 [old locus tag: SACOL0783 ]
  • symbol: SACOL_RS04025
  • product: ABC transporter permease
  • replicon: chromosome
  • strand: +
  • coordinates: 805769..807283
  • length: 1515
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (805769..807283) NCBI
  • BioCyc: SACOL_RS04025 BioCyc
  • MicrobesOnline: see SACOL0783

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGACTAACTTTTTCGACATATTGAGTGAACGTAAGGGGCAACTCTTTTCGACAATGATA
    GAACATATTCAAATATCATTTATCGCATTATTGATTGCAACTGCTATTGCGGTACCATTA
    GGTATTTTATTAACGAAGACTAAAACGATATCTGAAATCGTAATGAATATTGCGGCAATT
    CTTCAAACCATACCATCGTTGGCATTATTAGGTTTAATGATTCCTTTATTTGGTATCGGT
    CGTGTGCCAGCAATTATTGCACTTGTAGTGTATGCGTTGTTACCAATTTTAAGGAATACG
    TATACTGGAATTAAAGAAGTTGATCCATCACTCATTGAAGCGGCTAAAGGTATAGGTATG
    AAACCATTTAGACGTTTAACTAAAGTCGAACTTCCGATAGCAATGCCTGTTATAATGGCT
    GGTGTAAGAACGGCTATGGTATTAATTATAGGTACAGCAACACTAGCAGCATTAATTGGT
    GCAGGCGGACTAGGAGATTTAATTTTATTAGGTATAGACCGTAACAATGCATCGTTGATA
    TTATTAGGTGCAATTCCAGCAGCCTTATTGGCAATTATATTTGATTTAATTTTAAGATTT
    ATGGCTAAATTATCTTATAAAAAGTTATTGATGACGTTAGGTGTTATAGTGATGATTATT
    ATACTGGCTATCGCTATTCCTATGTTTGCACAAAAAGGTGATAAAATTACGTTAGCTGGA
    AAGCTTGGCTCCGAGCCATCGATTATTACAAATATGTATAAAATTTTAATAGAAGAAGAG
    ACCAAAAATACTGTAGAAGTGAAAGATGGTATGGGCAAAACAGCATTTTTATTTAATGCT
    TTAAAATCTGACGATATAGATGGGTATTTAGAATTTACTGGAACAGTTTTAGGTGAATTA
    ACAAAAGAACCATTGAAGTCAAAAGAAGAGAAAAAAGTTTATGAACAAGCTAAGCAAAGT
    CTTGAAAAGAAATATCAAATGACTATGTTAAAACCAATGAAGTATAACAATACGTATGCT
    TTAGCTGTAAAACGTGATTTTGCTAAACAACATAATATACGTACAATTGGTGATTTAAAT
    AAGGTTAAAGATCAACTTAAACCAGGATTTACATTGGAATTTAATGATCGTCCAGATGGT
    TACAAAGCTGTTCAAAAGGCTTATAATTTAAATTTAGATAACATACGTACAATGGAACCT
    AAGTTGAGATATCAAGCGATCAATAAAGGTAATATTAATTTAATAGATGCATATTCAACT
    GACGCTGAATTAAAACAATATGATATGGTTGTGTTAAAAGATGATAAGCACGTATTTCCA
    CCATATCAAGGAGCACCATTATTTAAAGAAAGCTTTTTAAAGAAACATCCAGAAATTAAG
    AAACCGTTAAACAAACTAGAAAACAAAATATCTGATGAAGATATGCAAATGATGAACTAT
    AAAGTAACAGTTAAAAATGAAGACCCATATACAGTTGCGAAAGATTATTTAAAAGCAAAA
    GGGTTAATCAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1515

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS04025 [old locus tag: SACOL0783 ]
  • symbol: SACOL_RS04025
  • description: ABC transporter permease
  • length: 504
  • theoretical pI: 9.9494
  • theoretical MW: 56057.4
  • GRAVY: 0.150794

⊟Function[edit | edit source]

  • TIGRFAM:
    choline ABC transporter, permease protein (TIGR03416; HMM-score: 113.1)
    and 8 more
    Metabolism Transport and binding proteins Anions nitrate ABC transporter, permease protein (TIGR01183; HMM-score: 47)
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, permease protein PhnE (TIGR01097; HMM-score: 45.8)
    2-aminoethylphosphonate ABC transporter, permease protein (TIGR03226; HMM-score: 27.5)
    Metabolism Transport and binding proteins Anions phosphate ABC transporter, permease protein PstA (TIGR00974; HMM-score: 21.3)
    2-aminoethylphosphonate ABC transport system, membrane component PhnV (TIGR03255; HMM-score: 19.6)
    NifC-like ABC-type porter (TIGR01581; HMM-score: 19)
    Metabolism Transport and binding proteins Anions molybdate ABC transporter, permease protein (TIGR02141; HMM-score: 18.2)
    ectoine/hydroxyectoine ABC transporter, permease protein EhuC (TIGR03004; HMM-score: 8.4)
  • TheSEED: see SACOL0783
  • PFAM:
    PBP (CL0177) OpuAC; Substrate binding domain of ABC-type glycine betaine transport system (PF04069; HMM-score: 210.3)
    and 2 more
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 93.7)
    CYTH (CL0273) Med18; Med18 protein (PF09637; HMM-score: 13.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007348
    • TAT(Tat/SPI): 0.000625
    • LIPO(Sec/SPII): 0.00171
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDYLKAKGLIK

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL0783
  • protein localization: see SACOL0783
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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