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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS05030 [old locus tag: SACOL0983 ]
  • pan locus tag?: SAUPAN003121000
  • symbol: SACOL_RS05030
  • pan gene symbol?: —
  • synonym:
  • product: membrane protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS05030 [old locus tag: SACOL0983 ]
  • symbol: SACOL_RS05030
  • product: membrane protein
  • replicon: chromosome
  • strand: +
  • coordinates: 991657..992775
  • length: 1119
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (991657..992775) NCBI
  • BioCyc: SACOL_RS05030 BioCyc
  • MicrobesOnline: see SACOL0983

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGAATAAGTTAATACTTGGGATTTATTTATACCGAATTTTTTCACGAGCATACTTTTAT
    TTACCGTTTTTATTAATTTACTTTTTGATTCAAGGTTATTCCATAATACAATTAGAAATA
    TTAATGGCGTCTTATGGCATTGCAGCATTTTTATTCTCTCTATACAAAGAGAAGTGTTTT
    AAAATTTGTAACTTAAAAGATTCTAATAAATTAGTTGTTAGTGAAATATTCAAAATCATC
    GGTTTATTGTTGTTATTATATCAAAATCAATATTTAATTTTAGTAGTGGCACAAATATTA
    TTAGGGTTAAGTTACTCAATGATGGCGGGTGTTGATACCGCAATAATTAAAAGAAATATA
    ACAAATGAGAAATACGTACAAAATAAGTCAAATAGCTATATGTTCCTATCATTATTAATT
    TCAGGGATTATAGGTAGTTATCTTTATGGAATAAATATTAAATGGCCTATAATAATGACT
    GGTATATTTTCAATTCTAACAATTATAATTATTCGATGCACATTAGTTGAAAATAGGGAA
    TTAAATTTAATAGGAGAAACAAAGGGAAAGATAAAGAAATTTCTACCAGAAGAGAAGTTT
    TGGATATTGCATTATTCTTTTTTAAGAGCGTTAATATTAGGATTTTTTATAGGATTTATT
    CCAATTAATATATATAATGATTTAAAACTGAATAATTTACAATTTATTTCAGTATTAACT
    TGTTACACAGTTATGGGTTTTGTATCTTCACGTTATTTAACTAAATACTTGAATTATAAG
    TTTGTGTCAGAAATTTGTTTAGTAATATTTTTAATAATATATACATATCAAAGTTTCATA
    GCAGTTACTATTTCTATGATATTTTTAGGTATTTCTTCAGGGTTAACTCGTCCACAAACT
    ATAAATAAACTTTCTAGCAGTAGTAACTTAAGAGTGATGCTTAATTATGCAGAAACGTTA
    TATTTTATTTTTAATATCGCATTTTTACTTATGGGTGGTTACTTATATACAATAGGAACT
    ATTCAATACTTAATATTATTTATTTCGTTATTAATTTTTATATATTTAATAATAATATTT
    TATTTTACAAGGAGAGAGCAACATGAAAATAAAAACTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1119


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS05030 [old locus tag: SACOL0983 ]
  • symbol: SACOL_RS05030
  • description: membrane protein
  • length: 372
  • theoretical pI: 9.71449
  • theoretical MW: 43314.8
  • GRAVY: 0.756183

⊟Function[edit | edit source]

  • TIGRFAM:
    multidrug resistance protein (TIGR00880; HMM-score: 27.4)
  • TheSEED: see SACOL0983
  • PFAM:
    MFS (CL0015) MFS_1; Major Facilitator Superfamily (PF07690; HMM-score: 51.8)
    and 1 more
    RND_permease (CL0322) MMPL; MMPL family (PF03176; HMM-score: 7.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9947
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0052
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.018532
    • TAT(Tat/SPI): 0.000279
    • LIPO(Sec/SPII): 0.013364
  • predicted transmembrane helices (TMHMM): 11

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNKLILGIYLYRIFSRAYFYLPFLLIYFLIQGYSIIQLEILMASYGIAAFLFSLYKEKCFKICNLKDSNKLVVSEIFKIIGLLLLLYQNQYLILVVAQILLGLSYSMMAGVDTAIIKRNITNEKYVQNKSNSYMFLSLLISGIIGSYLYGINIKWPIIMTGIFSILTIIIIRCTLVENRELNLIGETKGKIKKFLPEEKFWILHYSFLRALILGFFIGFIPINIYNDLKLNNLQFISVLTCYTVMGFVSSRYLTKYLNYKFVSEICLVIFLIIYTYQSFIAVTISMIFLGISSGLTRPQTINKLSSSSNLRVMLNYAETLYFIFNIAFLLMGGYLYTIGTIQYLILFISLLIFIYLIIIFYFTRREQHENKN

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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