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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS05190 [old locus tag: SACOL1017 ]
  • pan locus tag?: SAUPAN003186000
  • symbol: SACOL_RS05190
  • pan gene symbol?: cozEa
  • synonym:
  • product: AI-2E family transporter

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS05190 [old locus tag: SACOL1017 ]
  • symbol: SACOL_RS05190
  • product: AI-2E family transporter
  • replicon: chromosome
  • strand: -
  • coordinates: 1024606..1025691
  • length: 1086
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1024606..1025691) NCBI
  • BioCyc: SACOL_RS05190 BioCyc
  • MicrobesOnline: see SACOL1017

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGTTAAACAAGGTTTGGTTCCGAACTGGCATCGCTCTGATTATGCTGTTCATTCTCATC
    AAACTATTTATGGAAGTGCACGAAGTATTTACTCCAATAGCTACAATCATCGGTTCTGTA
    TTTCTTCCATTTTTAATTAGTGGTTTTTTATTTTATATCTGTCTACCTTTTCAAAACTTA
    CTTGAAAAAGTCGGTTTTCCAAGATGGGCTAGTATAACAACAATCATGTTAGCTTTGTTT
    GCTATTATCGGCTTAATTGTTGCGTTTGTTGCACCAATCATCATTTCAAATATCAACAAT
    TTAATTAGTCAGACACCTGCCCTACAAAAAGAAGCAGAGCAAATTATTAAATTCGCACTA
    GCTCAAATGGATAAATTACCTGAAGATGTAACAAGTAGAATTACAAATATGGTTAAATCA
    ATGGGTGATGGCGTTACTAATATTTTATCTAATTCATTACAGTACATTACATCATTAATT
    TCAACCATCTTCTTATTGATTATGGTTCCATTCTTCTTAATTTATATGTTAAAAGACCAT
    GAAAAATTTATCCCAGCTGTTGCTAAATTTTTCAAAGGTGAACGTAAAGTATTTTTCGTA
    GATTTATTAACTGATTTAAACTTTACATTAAAATCTTACATTCAAGGTCAAGTAACTGTC
    AGTGTTATTTTAGGTATATTCTTATATATCGGTTATTCAATTATTGACTTACCATATATT
    CCTTTATTAGTACTATTTGCTGGTGTCGCAAACTTAATTCCTTTCTTAGGTTCATGGTTA
    TCATTTGCACCTGCAGCAATACTCGGTATTATAGATAGTCCTACTACATTTATATGGGTT
    TGTATCATTACATTAATTGCACATCAACTTGAAGGTAATATCATTACACCAAATGTAATG
    GGTAAATCTTTAAGTATCCATCCTTTAACAATTATCGTTGTTATTTTAGCAGCAGGAGAT
    TTAGGTGGCTTTACATTAGTTCTGATTGCAGTGCCATTATATGCTGTACTTAAAACGGTT
    GTTAGTAATATTTTCAAATACCGCCAACGCATTATTGATAAAGCAAACAGTAATGTTAAG
    GACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1086


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS05190 [old locus tag: SACOL1017 ]
  • symbol: SACOL_RS05190
  • description: AI-2E family transporter
  • length: 361
  • theoretical pI: 9.22205
  • theoretical MW: 40154.1
  • GRAVY: 0.97036

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Sporulation and germination sporulation integral membrane protein YtvI (TIGR02872; HMM-score: 76.9)
    and 1 more
    P-type conjugative transfer protein TrbJ (TIGR02780; HMM-score: 11.1)
  • TheSEED: see SACOL1017
  • PFAM:
    no clan defined AI-2E_transport; AI-2E family transporter (PF01594; HMM-score: 215.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9997
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0003
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.019201
    • TAT(Tat/SPI): 0.000191
    • LIPO(Sec/SPII): 0.012446
  • predicted transmembrane helices (TMHMM): 9

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLNKVWFRTGIALIMLFILIKLFMEVHEVFTPIATIIGSVFLPFLISGFLFYICLPFQNLLEKVGFPRWASITTIMLALFAIIGLIVAFVAPIIISNINNLISQTPALQKEAEQIIKFALAQMDKLPEDVTSRITNMVKSMGDGVTNILSNSLQYITSLISTIFLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFFVDLLTDLNFTLKSYIQGQVTVSVILGIFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAPAAILGIIDSPTTFIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLVLIAVPLYAVLKTVVSNIFKYRQRIIDKANSNVKD

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1017
  • protein localization: see SACOL1017
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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