From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS05225 [old locus tag: SACOL1024 ]
  • pan locus tag?: SAUPAN003197000
  • symbol: SACOL_RS05225
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS05225 [old locus tag: SACOL1024 ]
  • symbol: SACOL_RS05225
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1033558..1033818
  • length: 261
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1033558..1033818) NCBI
  • BioCyc: SACOL_RS05225 BioCyc
  • MicrobesOnline: see SACOL1024

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    GTGGCCCTGTTGATTAATAAAAGATTTATTGATGAAGGTAAAACTATTGATGTTTATTTA
    TTCGAAGCATTAAATAACCAGATAATCATTGCTATACCAGATTGGTTTTGGTCATATCAG
    ATGGCAATGACATTAGATGAAGAAACTTGTTTTGAAGCAATACTCATGCAATTGTTTGTT
    TTTAAAGAAGAGGAAGAGGCAGAATCGATTGCATCACAACTAACAGATTGGATAGAAACA
    TATAAAAAGGAGAAAGACTAA
    60
    120
    180
    240
    261


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS05225 [old locus tag: SACOL1024 ]
  • symbol: SACOL_RS05225
  • description: hypothetical protein
  • length: 86
  • theoretical pI: 3.87053
  • theoretical MW: 10250.7
  • GRAVY: -0.0767442

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SACOL1024
  • PFAM:
    no clan defined YueH; YueH-like protein (PF14166; HMM-score: 103.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.7133
    • Cytoplasmic Membrane Score: 0.0808
    • Cell wall & surface Score: 0.0003
    • Extracellular Score: 0.2055
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.000632
    • TAT(Tat/SPI): 0.000051
    • LIPO(Sec/SPII): 0.000155
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MALLINKRFIDEGKTIDVYLFEALNNQIIIAIPDWFWSYQMAMTLDEETCFEAILMQLFVFKEEEEAESIASQLTDWIETYKKEKD

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SACOL_RS05225&oldid=132437"