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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL_RS05590 [old locus tag: SACOL1095 ]
- pan locus tag?: SAUPAN003307000
- symbol: SACOL_RS05590
- pan gene symbol?: cydB
- synonym:
- product: cytochrome D ubiquinol oxidase subunit II
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL_RS05590 [old locus tag: SACOL1095 ]
- symbol: SACOL_RS05590
- product: cytochrome D ubiquinol oxidase subunit II
- replicon: chromosome
- strand: +
- coordinates: 1105798..1106817
- length: 1020
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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901
961ATGATTTATGCATTTATAGGTATAACAGTGTTATGGTTGTTTTTATTTTGCTATATCATT
ATTGCTTCTATAGATTTTGGGGCAGGTTTCTTCGCATTGCATTCAAAGTTAACTGGTGAT
GAAAAGAAAATTAATCACTTAATTTCACGTTATTTAAACCCAGTTTGGGAAGTTACGAAT
GTATTCTTTGTTTTCTTCTTCGTAGGATTCGTAGGTTTCTTTCCAGAGTCAATCAAATAT
TTAGGCACGGTATTGTTAATACCAGGTTCAATAGCACTGATTATGATATCGTTGAGAAAC
AGTTTTTATGCATTTGAAAATTATGGTCAAGATACAAAATTAGCATGGATGATCATGTAT
GGGGTAAGTGGATTATTAATTCCAGCTTCATTATCTACTGCTTTAACTATTACAGAAGGT
GGCTATATTAATGTTCGAAACAATGTTATCGATCTAGATTGGGTGCAGTTATTATTAAGC
CCATTTGCTTGGTCTGTAGTATTCTTGGCAATTATTTCAGTTTTATATATTTCATCAGGA
TTTTTGACATATTATGCTAAAAAAGCAAATGACGAACCAGCATATAATTTAACAAGACAA
TGGCACATATTTTTAGGGCCGCCGATGATTATCATTTGTTTATTCGTATTTCTATCATTA
CGCATTCAAAATTCTGAACATTTTTATTCAGCTGTTTTTGACTATTGGTGGATGTTTGGT
ATAAGTTTCTTATTCTTTGCATTAGCTTCATTGTTAACATTCTTTAAGAAAAAACATGGT
TTGGCTTTTGTATTTGTTATTTTACAAATGATGTTCGCGTTCTTTGGCTATGGAATTAGT
AAATTGCCATACCTTTTATATCCGTTTGTAAAAATTACAGATGCATATGTTAATCCAGAA
ATGGGCTGGACATTAGTGATTGTCTTTATTTTAGGTTTACTTTTATTACTTCCATCGTTA
ATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAA60
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1020
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL_RS05590 [old locus tag: SACOL1095 ]
- symbol: SACOL_RS05590
- description: cytochrome D ubiquinol oxidase subunit II
- length: 339
- theoretical pI: 8.52158
- theoretical MW: 38946.1
- GRAVY: 0.883481
⊟Function[edit | edit source]
- reaction: EC 1.10.3.-? ExPASy
- TIGRFAM:
- TheSEED: see SACOL1095
- PFAM: no clan defined Cyt_bd_oxida_II; Cytochrome bd terminal oxidase subunit II (PF02322; HMM-score: 137.2)and 2 moreDUF2516; Protein of unknown function (DUF2516) (PF10724; HMM-score: 17.2)2heme_cytochrom (CL0328) Ni_hydr_CYTB; Prokaryotic cytochrome b561 (PF01292; HMM-score: 5.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 9
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.020286
- TAT(Tat/SPI): 0.000196
- LIPO(Sec/SPII): 0.027353
- predicted transmembrane helices (TMHMM): 9
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MIYAFIGITVLWLFLFCYIIIASIDFGAGFFALHSKLTGDEKKINHLISRYLNPVWEVTNVFFVFFFVGFVGFFPESIKYLGTVLLIPGSIALIMISLRNSFYAFENYGQDTKLAWMIMYGVSGLLIPASLSTALTITEGGYINVRNNVIDLDWVQLLLSPFAWSVVFLAIISVLYISSGFLTYYAKKANDEPAYNLTRQWHIFLGPPMIIICLFVFLSLRIQNSEHFYSAVFDYWWMFGISFLFFALASLLTFFKKKHGLAFVFVILQMMFAFFGYGISKLPYLLYPFVKITDAYVNPEMGWTLVIVFILGLLLLLPSLILLLRLFVFDKEYVEGKKS
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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