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NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS06260 [old locus tag: SACOL1222 ]
  • pan locus tag?: SAUPAN003492000
  • symbol: SACOL_RS06260
  • pan gene symbol?: rpoZ
  • synonym:
  • product: DNA-directed RNA polymerase subunit omega

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS06260 [old locus tag: SACOL1222 ]
  • symbol: SACOL_RS06260
  • product: DNA-directed RNA polymerase subunit omega
  • replicon: chromosome
  • strand: +
  • coordinates: 1231240..1231458
  • length: 219
  • essential: unknown other strains

Accession numbers[edit | edit source]

  • Location: NC_002951 (1231240..1231458) NCBI
  • BioCyc: G1G4B-1327 BioCyc
  • MicrobesOnline: see SACOL1222

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    ATGTTAAATCCACCTTTAAACCAATTAACGTCACAAATTAAATCAAAGTATTTAATTGCA
    ACAACTGCAGCGAAAAGAGCGCGTGAAATTGATGAACAACCTGAAACTGAATTATTAAGT
    GAATATCATTCATTTAAACCAGTTGGTAGAGCGTTAGAAGAAATTGCTGACGGTAAAATT
    CGCCCTGTTATTTCAAGTGATTATTATGGTAAAGAATAG
    60
    120
    180
    219

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL_RS06260 [old locus tag: SACOL1222 ]
  • symbol: SACOL_RS06260
  • description: DNA-directed RNA polymerase subunit omega
  • length: 72
  • theoretical pI: 5.84158
  • theoretical MW: 8150.19
  • GRAVY: -0.626389

Function[edit | edit source]

  • reaction:
    EC 2.7.7.6?  ExPASy
    DNA-directed RNA polymerase Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)
  • TIGRFAM:
    Genetic information processing Transcription DNA-dependent RNA polymerase DNA-directed RNA polymerase, omega subunit (TIGR00690; EC 2.7.7.6; HMM-score: 46.5)
  • TheSEED: see SACOL1222
  • PFAM:
    no clan defined RNA_pol_Rpb6; RNA polymerase Rpb6 (PF01192; HMM-score: 55.4)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.01031
    • TAT(Tat/SPI): 0.001037
    • LIPO(Sec/SPII): 0.002295
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MLNPPLNQLTSQIKSKYLIATTAAKRAREIDEQPETELLSEYHSFKPVGRALEEIADGKIRPVISSDYYGKE

Experimental data[edit | edit source]

  • experimentally validated: see SACOL1222
  • protein localization: see SACOL1222
  • quantitative data / protein copy number per cell: see SACOL1222
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]