From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS07025 [old locus tag: SACOL1380 ]
  • pan locus tag?: SAUPAN003720000
  • symbol: SACOL_RS07025
  • pan gene symbol?: —
  • synonym:
  • product: membrane protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS07025 [old locus tag: SACOL1380 ]
  • symbol: SACOL_RS07025
  • product: membrane protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1383014..1383481
  • length: 468
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1383014..1383481) NCBI
  • BioCyc: SACOL_RS07025 BioCyc
  • MicrobesOnline: see SACOL1380

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    GTGCTCTATTTAATATTTTCAATCATTGTAGCTTTATTTATGGGAACTATAGTTATAGTT
    ATTCGTATGAAAGCTCAAAATTATCCGGTAAATGAGAAAAAAATAGTTTTGCCACCGTTT
    TTTATGGCGACCGGTGCATTGATGTACGTCGTTCCATATTTTAGGCTAACAGGATCGGAA
    ATGCTAGAAGCCTTTATAATTGGTTTGCTTTTTTCTACAGTTCTAATTTGGACTTCTCGA
    TTTGAAGTCAAAGGTACAGAAATTTATATGAAACGATCTAAAGCATTTCCAGTTATTTTG
    ATTTCATTACTTATCATTCGTACTGTGATGAAAATATTCATTAGTAATGAAATAGATCCT
    GGAGAATTAGGCGGCATGTTCTTTTTATTAGCATTCTGTATGATTGTTCCTTGGAGAGCA
    GCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAA
    60
    120
    180
    240
    300
    360
    420
    468


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS07025 [old locus tag: SACOL1380 ]
  • symbol: SACOL_RS07025
  • description: membrane protein
  • length: 155
  • theoretical pI: 10.3894
  • theoretical MW: 17867.9
  • GRAVY: 0.856774

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds multicomponent Na+:H+ antiporter (TIGR00942; HMM-score: 13.5)
  • TheSEED: see SACOL1380
  • PFAM:
    no clan defined DUF1453; CcdC protein (PF07301; HMM-score: 201.6)
    and 2 more
    NADP_Rossmann (CL0063) DUF6094; Uncharacterised methyltransferase family (DUF6094) (PF19587; HMM-score: 10.9)
    no clan defined DUF2157; Predicted membrane protein (DUF2157) (PF09925; HMM-score: 10.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9999
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0001
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.045686
    • TAT(Tat/SPI): 0.00047
    • LIPO(Sec/SPII): 0.010404
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLYLIFSIIVALFMGTIVIVIRMKAQNYPVNEKKIVLPPFFMATGALMYVVPYFRLTGSEMLEAFIIGLLFSTVLIWTSRFEVKGTEIYMKRSKAFPVILISLLIIRTVMKIFISNEIDPGELGGMFFLLAFCMIVPWRAAMLYKYKKLKKTLIN

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1380
  • protein localization: see SACOL1380
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SACOL_RS07025&oldid=132791"