From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS07205 [old locus tag: SACOL1416 ]
  • pan locus tag?: SAUPAN003786000
  • symbol: SACOL_RS07205
  • pan gene symbol?: nikC
  • synonym: opp2C
  • product: peptide ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS07205 [old locus tag: SACOL1416 ]
  • symbol: SACOL_RS07205
  • product: peptide ABC transporter permease
  • replicon: chromosome
  • strand: -
  • coordinates: 1426938..1427768
  • length: 831
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1426938..1427768) NCBI
  • BioCyc: SACOL_RS07205 BioCyc
  • MicrobesOnline: see SACOL1416

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGCATAAAATATTTTCAAAGAATAACCTGATATTTTTTGTATTCGTTGCATTTATTTTT
    GTGGTAATTGTACTGCAATTCTTTGTCAGTAGTGAAAATGCAACCAAAGTCAATTTATCA
    CAAACTTTTGAACCTATTAGTTGGTTGCATTTATTAGGAACTGATGATTATGGGAGAGAT
    TTATTTACCCGAATTATTATCGGTGCACGTTCAACATTGTTTGTTACTGTTTTAACATTA
    ATAGCTATCGTTGTCATAGGTGTTACACTAGGTCTATTTGCCGGATACAAAAAAGGGTGG
    ATTGAACGATTAGTGTTAAGGTTTATTGATGTTGGTCTAAGTATTCCAGAATTTATCATC
    ATGATTGCTTTAGCAAGTTTTTTTCAACCATCTTTATGGAATTTAGTTATCTCAATTACA
    TTAATAAAATGGATGAATTACACAAGGTTGACTAGAAGTATAGTTAATAGCGAAATGAAT
    AAGCCTTATATAAAAATGGCACAATTATTTCATGTACCAACAAGAACAATATTAATACGT
    CATTTAACACCTAAAATTATACCGGCTATTATCGTTTTGATGGTCGTTGATTTCGGTAAA
    ATCATTCTATATATAAGTTCACTATCATTTATTGGGTTAGGTGCACAACCGCCAACACCA
    GAGTGGGGCGCTATGTTGCAACAAGGTCGTGATTTTATTTCGTCTCATCCAATTATGTTG
    ATTGCACCTGCTTCAGTCATTGCTATAACTATTTTAATTTTTAATTTAACCGGTGATGCA
    CTAAGAGATAGATTGCTGAAACAACGGGGTGAATATGATGAGTCTCATTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    831

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS07205 [old locus tag: SACOL1416 ]
  • symbol: SACOL_RS07205
  • description: peptide ABC transporter permease
  • length: 276
  • theoretical pI: 10.2524
  • theoretical MW: 31255.1
  • GRAVY: 0.687319

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel ABC transporter, permease subunit NikC (TIGR02790; EC 3.6.3.24; HMM-score: 247.7)
    and 2 more
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel ABC transporter, permease subunit NikB (TIGR02789; EC 3.6.3.24; HMM-score: 22.7)
    Metabolism Transport and binding proteins Amino acids, peptides and amines amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family (TIGR01726; HMM-score: 18.6)
  • TheSEED: see SACOL1416
  • PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 94.5)
    and 1 more
    no clan defined DHHC; DHHC palmitoyltransferase (PF01529; HMM-score: 6.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.332973
    • TAT(Tat/SPI): 0.001421
    • LIPO(Sec/SPII): 0.050311
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MHKIFSKNNLIFFVFVAFIFVVIVLQFFVSSENATKVNLSQTFEPISWLHLLGTDDYGRDLFTRIIIGARSTLFVTVLTLIAIVVIGVTLGLFAGYKKGWIERLVLRFIDVGLSIPEFIIMIALASFFQPSLWNLVISITLIKWMNYTRLTRSIVNSEMNKPYIKMAQLFHVPTRTILIRHLTPKIIPAIIVLMVVDFGKIILYISSLSFIGLGAQPPTPEWGAMLQQGRDFISSHPIMLIAPASVIAITILIFNLTGDALRDRLLKQRGEYDESH

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SACOL_RS07205&oldid=98335"