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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS07485 [old locus tag: SACOL1467 ]
  • pan locus tag?: SAUPAN003863000
  • symbol: SACOL_RS07485
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS07485 [old locus tag: SACOL1467 ]
  • symbol: SACOL_RS07485
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1477723..1477944
  • length: 222
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1477723..1477944) NCBI
  • BioCyc: SACOL_RS07485 BioCyc
  • MicrobesOnline: see SACOL1467

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    TTGCAATATTTTGAAGTAATAAAGGAAGTGTCGCGTATTTTAACTTTTTCAGAGCAAAAT
    GCACTCGCGAAAATAGATGATTTAATGAATACTTATTGCAATCAATGTCCAATCAAAACT
    CGTCTGCGTAAATTAGAGGGGAAAACGAAGGCGCATCATTTTTGTATCAATGAGTGTTCA
    ATAGGGAAAGAAATAAAACAATTAGGAAATGAACTTCAATAG
    60
    120
    180
    222


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS07485 [old locus tag: SACOL1467 ]
  • symbol: SACOL_RS07485
  • description: hypothetical protein
  • length: 73
  • theoretical pI: 8.33209
  • theoretical MW: 8503.86
  • GRAVY: -0.467123

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SACOL1467
  • PFAM:
    no clan defined zf-C2HCIx2C; Zinc-finger (PF10782; HMM-score: 97.5)
    and 1 more
    RPC3_helical; DNA-directed RNA polymerase III subunit RPC3, helical hairpin domain (PF20912; HMM-score: 13.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9763
    • Cytoplasmic Membrane Score: 0.0161
    • Cell wall & surface Score: 0.001
    • Extracellular Score: 0.0066
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.036022
    • TAT(Tat/SPI): 0.001693
    • LIPO(Sec/SPII): 0.003693
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MQYFEVIKEVSRILTFSEQNALAKIDDLMNTYCNQCPIKTRLRKLEGKTKAHHFCINECSIGKEIKQLGNELQ

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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