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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

organism: Staphylococcus aureus COL
locus tag: SACOL_RS09660 [old locus tag: SACOL1882 ]
pan locus tag^?: SAUPAN004601000
symbol: SACOL_RS09660
pan gene symbol^?: —
synonym:
product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: SACOL_RS09660 [old locus tag: SACOL1882 ]
symbol: SACOL_RS09660
product: hypothetical protein
replicon: chromosome
strand: +
coordinates: 1937391..1937930
length: 540
essential: unknown other strains

⊟Accession numbers[edit | edit source]

Location: NC_002951 (1937391..1937930) NCBI
BioCyc: SACOL_RS09660 BioCyc
MicrobesOnline: see SACOL1882

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

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TTGGTTGTGTATGCATCTCACCTATCTTTTTTGCTTTTTTCAAATAAGAAAGTATTAAAA
ATTAATGCCTATACAGGAACAGACATGGCTAAACTTGATTTAAATAGTCTTGACGACGAG
CACGTAAAATTATTAATAAATGAATTAAAATATCCAGAAACTCATATCGATGTAAATGAA
TTAAAAACAATAGTTGCTAGTCGAATAAATGAAAGGCAAGAAATAATAAGTTTTAAGTTA
GGAATAAAGTACTTATTAACAATAAAAAGAGGGAACATAGAAAAAGATAGGTTTTCAATT
TCAATCATTTTCAAAGATACCTATCACACCCTAGTTAGAATAGATATTAACGGTGGTACT
CACGATAATCCAGATGGAACAATCGCTCCGAAAAGTCATATTCACATATATAATGATAAG
TATGATAAAAAGGATAGGTTTGCTTATGAAATTAACTTGAAAGATTTCCCCGACATCTAT
AACTTGTATAATGTGTATATGTCGTTTTTAGAGTATAATAATATAAAAGACCTTGAATAA
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540

⊟Protein[edit | edit source]

⊟General[edit | edit source]

locus tag: SACOL_RS09660 [old locus tag: SACOL1882 ]
symbol: SACOL_RS09660
description: hypothetical protein
length: 179
theoretical pI: 6.89886
theoretical MW: 20980.9
GRAVY: -0.369274

⊟Function[edit | edit source]

TIGRFAM:
TheSEED: see SACOL1882
PFAM:

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
LocateP:
SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.011566
- TAT(Tat/SPI): 0.000447
- LIPO(Sec/SPII): 0.002627
predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

GI: see SACOL1882
RefSeq: WP_001790220 NCBI
UniProt: see SACOL1882

⊟Protein sequence[edit | edit source]

MVVYASHLSFLLFSNKKVLKINAYTGTDMAKLDLNSLDDEHVKLLINELKYPETHIDVNELKTIVASRINERQEIISFKLGIKYLLTIKRGNIEKDRFSISIIFKDTYHTLVRIDINGGTHDNPDGTIAPKSHIHIYNDKYDKKDRFAYEINLKDFPDIYNLYNVYMSFLEYNNIKDLE

⊟Experimental data[edit | edit source]

experimentally validated:
protein localization:
quantitative data / protein copy number per cell:
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

regulator:

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: no data available

⊟Protein stability[edit | edit source]

half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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