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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL_RS09665 [old locus tag: SACOL1883 ]
- pan locus tag?: SAUPAN004604000
- symbol: SACOL_RS09665
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL_RS09665 [old locus tag: SACOL1883 ]
- symbol: SACOL_RS09665
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 1937943..1938731
- length: 789
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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541
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721
781ATGACTACATTTGATGCTAAAAAATTAAAAAAAGAATATCTTGATTGGTATAATCAGACC
TTAGAGTTTTCTAATTTATCAAACAATGTAGTAAGAATAGATACTCCTTTTAAAGATAAT
TCTTTAGATAATTTAATAATTTACGCTTTATACGATCAGTCCAGAGACATGATTACACTG
ACAGATGACGGCTATACTATATTTGATTTAGAAAATAATGGTATTTCTTTAAATAAATCA
AAAAAACGTAAAAAGATTTTTGAAGAGCACCTTTCAGCTTACGGTATTAAATATAACGAT
AAAACTCACGAAATTTTTGTTCAAACTAACTTTAAAAATTTTAATAAATCGAAACATAAT
TTATTACAGTGCCTTATATTTGTTAATGATATGTACTTACTTTCTAATCCTAAGTCACAG
AACATATTTACAGAAGATGTTGCAAACAAATTGGATGAACATAACATTTATTACGGAAGA
GATTTACCTATTATAGGAAGCAGTGGTGTTGTTCATAATTTCGACTTTTTTATTAGCGCT
AAGAAAAATCAAAAAGAAAAATTTATCAATGCTATTTCTAACCCTAATAATTCTATGATT
ATTAAGTCGAAAATAACGGATGCTATGCAAGCAAAAAAAATAAAAAGACACAGGCAAAAT
GAGTTTATTTTTATTTTAAATGACTCAAAAAAAGAAATAAATGAACATAATAAAAATCTT
CTTCATGAAAACTATATTAGTACAATAGATTATAGCGAATTAGATGAAAAGATAGGTTTA
TTGATTTAA60
120
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789
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL_RS09665 [old locus tag: SACOL1883 ]
- symbol: SACOL_RS09665
- description: hypothetical protein
- length: 262
- theoretical pI: 8.3608
- theoretical MW: 30758.7
- GRAVY: -0.611069
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SACOL1883
- PFAM: no clan defined DUF1828; Domain of unknown function DUF1828 (PF08861; HMM-score: 86.7)DUF1829; Domain of unknown function DUF1829 (PF08862; HMM-score: 79.3)and 1 moreDUF4284; Immunity protein 22 (PF14112; HMM-score: 8.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003374
- TAT(Tat/SPI): 0.00008
- LIPO(Sec/SPII): 0.000397
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTTFDAKKLKKEYLDWYNQTLEFSNLSNNVVRIDTPFKDNSLDNLIIYALYDQSRDMITLTDDGYTIFDLENNGISLNKSKKRKKIFEEHLSAYGIKYNDKTHEIFVQTNFKNFNKSKHNLLQCLIFVNDMYLLSNPKSQNIFTEDVANKLDEHNIYYGRDLPIIGSSGVVHNFDFFISAKKNQKEKFINAISNPNNSMIIKSKITDAMQAKKIKRHRQNEFIFILNDSKKEINEHNKNLLHENYISTIDYSELDEKIGLLI
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.