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NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS10760 [old locus tag: SACOL2056 ]
  • pan locus tag?: SAUPAN005335000
  • symbol: SACOL_RS10760
  • pan gene symbol?: rsbV
  • synonym:
  • product: anti-sigma B factor antagonist

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS10760 [old locus tag: SACOL2056 ]
  • symbol: SACOL_RS10760
  • product: anti-sigma B factor antagonist
  • replicon: chromosome
  • strand: -
  • coordinates: 2122418..2122744
  • length: 327
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: NC_002951 (2122418..2122744) NCBI
  • BioCyc: G1G4B-2262 BioCyc
  • MicrobesOnline:

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGAATCTTAATATAGAAACAACCACTCAAGATAAATTTTACGAAGTTAAAGTCGGTGGA
    GAATTAGATGTTTATACTGTGCCTGAATTAGAAGAGGTTTTAACACCTATGAGACAAGAT
    GGAACTCGTGATATTTATGTTAATTTAGAAAATGTGAGTTATATGGATTCGACAGGTTTA
    GGTTTATTCGTAGGTACATTAAAAGCATTAAACCAAAATGATAAAGAACTATACATTTTA
    GGTGTGTCAGATCGTATCGGTAGACTATTTGAAATTACTGGTCTTAAGGATTTAATGCAT
    GTTAATGAAGGAACGGAGGTCGAATAA
    60
    120
    180
    240
    300
    327

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL_RS10760 [old locus tag: SACOL2056 ]
  • symbol: SACOL_RS10760
  • description: anti-sigma B factor antagonist
  • length: 108
  • theoretical pI: 4.04316
  • theoretical MW: 12204.7
  • GRAVY: -0.269444

Function[edit | edit source]

  • TIGRFAM:
    Signal transduction Regulatory functions Protein interactions anti-anti-sigma factor (TIGR00377; HMM-score: 117.5)
    and 2 more
    Cellular processes Cellular processes Sporulation and germination anti-sigma F factor antagonist (TIGR02886; HMM-score: 66.1)
    Signal transduction Regulatory functions Protein interactions anti-sigma F factor antagonist (TIGR02886; HMM-score: 66.1)
  • TheSEED:
  • PFAM:
    STAS (CL0502) STAS; STAS domain (PF01740; HMM-score: 50.1)
    STAS_2; STAS domain (PF13466; HMM-score: 43.7)

Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005334
    • TAT(Tat/SPI): 0.000475
    • LIPO(Sec/SPII): 0.000573
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

  • GI: 446975235 NCBI
  • RefSeq: WP_001052491 NCBI
  • UniProt:

Protein sequence[edit | edit source]

  • MNLNIETTTQDKFYEVKVGGELDVYTVPELEEVLTPMRQDGTRDIYVNLENVSYMDSTGLGLFVGTLKALNQNDKELYILGVSDRIGRLFEITGLKDLMHVNEGTEVE

Experimental data[edit | edit source]

  • experimentally validated: no data available

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]