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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL_RS11210 [old locus tag: SACOL2142 ]
- pan locus tag?: SAUPAN005459000
- symbol: SACOL_RS11210
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL_RS11210 [old locus tag: SACOL2142 ]
- symbol: SACOL_RS11210
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2202166..2203302
- length: 1137
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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1021
1081GTGAGCGTAAATGCACGTGATTTATTAGTATTACACACTAATGTAAATAGATTGGTTGGA
GAAGAGATATTTGCTAATAAGTGCCTTGCTAATAATGATGTTCAAATTATGAATTCAATA
AAAAAATTAATTGAAGCTGAGTTATTAACAACGACTAATGATTTTGAAGTTAGTATATAT
AAAAAGACAAGACCTGAATTACAAAGTATTTTAAAAAGTTTTGGTATAAAAACAACAGGT
AATAAACCTGACTTAATTAAACGTATTGACGACAATTTTCATATTATTAATAACTTAGAT
TTACCATATGTATATATACCAACTAAGAAAGGAGAAGAAATTTTAAAGAAAACAGAGTAC
TTAACCTCTTTTATACAAAGTTATGGTGAAATTTCTCTTGAGCGTGCTTATTATTTGGTT
GAAAACTATATAGATGAAAATTGCGATGATAAAGTTGCAGAAATATACAAGTTTGAATTT
CAAAGAAAATATGACAATGGCGAGTTTGATTTTAATCATGGATATAATTTCGAATTGAAT
ATGTTGATAGATCACTATAAAAGAGATGTAAAAGACTACGATAATGCCAGAAAGTATTCA
AATATTTATCTTTACTTTGGTTTGAGAGATTTCTTAAAAAAATTAATGAGTAATTATTCA
TATTACGATAGTAAAGGGAATATAGATTTGAACGAAATACAAAACGATCTGAATAGATTT
ATCAACTCTAGCGCTTCTGGTATGTACGAGCGATTAATATATAATGAAAATTTATCCAAT
AATATTATGTTTGAATTATTTAAAAAGGACACACAAGATTATAGTGATTTGGAAGAACAA
TTGATTGAAAAGTTCATAAACTATGTAGTGTCTAATGTAAAAAAAGAAAGTAGGAGTAAT
ACTCTTATAGAGTTATCAAAAATTTTAGAGAACGGATATACAATTGATAAAGAAGAATTT
AAAAAAGAAGATGATTATCTTTCTAAGTACATATTTACTGACATAGATTATTTGAAAAAG
TTAGAATCAAAAATAAACGTTGCTATTGATATTCGAAGTGGAGAAATTCATTTGGTATTA
GATGATGATAGCCTTGATATATTAATACAAAATCAAAAATACGGCAATGAGTTTTGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL_RS11210 [old locus tag: SACOL2142 ]
- symbol: SACOL_RS11210
- description: hypothetical protein
- length: 378
- theoretical pI: 4.66086
- theoretical MW: 44703.1
- GRAVY: -0.575132
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SACOL2142
- PFAM: HeH (CL0306) SAP; SAP domain (PF02037; HMM-score: 36.6)and 1 moreno clan defined Dpoe2NT; DNA polymerases epsilon N terminal (PF12213; HMM-score: 12.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.005159
- TAT(Tat/SPI): 0.000452
- LIPO(Sec/SPII): 0.000542
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MSVNARDLLVLHTNVNRLVGEEIFANKCLANNDVQIMNSIKKLIEAELLTTTNDFEVSIYKKTRPELQSILKSFGIKTTGNKPDLIKRIDDNFHIINNLDLPYVYIPTKKGEEILKKTEYLTSFIQSYGEISLERAYYLVENYIDENCDDKVAEIYKFEFQRKYDNGEFDFNHGYNFELNMLIDHYKRDVKDYDNARKYSNIYLYFGLRDFLKKLMSNYSYYDSKGNIDLNEIQNDLNRFINSSASGMYERLIYNENLSNNIMFELFKKDTQDYSDLEEQLIEKFINYVVSNVKKESRSNTLIELSKILENGYTIDKEEFKKEDDYLSKYIFTDIDYLKKLESKINVAIDIRSGEIHLVLDDDSLDILIQNQKYGNEF
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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