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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL_RS11825 [old locus tag: SACOL2248 ]
- pan locus tag?: SAUPAN005714000
- symbol: SACOL_RS11825
- pan gene symbol?: —
- synonym:
- product: malonate transporter
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL_RS11825 [old locus tag: SACOL2248 ]
- symbol: SACOL_RS11825
- product: malonate transporter
- replicon: chromosome
- strand: -
- coordinates: 2314543..2315433
- length: 891
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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841ATGATTATTTTATTAATTGCGCTTGGTTACTTTTTGAAGCGCATTAATTTTATAAAAGCA
ACAGATAGTCAAGTCATTGCTACATTAGTTCTTAATGTCACACTCCCATCTTTAGTTATT
GTGAATTTAAACAGTGCAGAATTAAAATTGTCATTCTCCATTTTACCAATTTTAATGATT
ATATATGGTATTGTGGCGAAAATGATTGCTGTCTGGTTTTTTAGAAAATATGATAATCAC
ATGCGTGGATCAGTAGGTATGATGACTGGTGCTATGAATATTGGATTGTTTGCATATCCA
CTAATTGAAGTGATATGGCCTAAAACGGGACTTATTTATTTTGTTATGGCTGATATAGGT
GGTGCCTTTGTGATGTTTGGAATTACTTACTTTGTAGGTAGCTACTTTAGTGAAGGTAGT
GATCAATTCGATTTTAAATATTTAGGTAAGAAATTATTACAATCAGTGCCACTCGTTACA
TACATTGTAATGTTTATATTGAATATAAGTCACATCCATTTACCACATGTGGCAATCGAT
TTCTTTAGCATACTTTCCCATGCAAATATGCCGTTATCAATGATTTTGCTAGGTGTCATG
TTGAATTTTACTCTGGAAAGAAAGTATATACCTGCTACTATTAAATATTTATGTTTGCAT
TATGGATTAGCATTAGTTGCGGGATTGTTAGTATATGTGTTGTTACCAGTATCAGATGAT
ATGATTAAGACGACATTGTTGGTCACTTGGATGTTCCCGGTAGGTGTTGCAATTATTTCT
TATGGTATTCAGTTTAAATATCGAACACTGCCATTTATAGGTATGACGACCAATTTGACA
ATCATTATTAGTATCATTATTTTGTACGTGTATCAGGCAGTGTTTGTCTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL_RS11825 [old locus tag: SACOL2248 ]
- symbol: SACOL_RS11825
- description: malonate transporter
- length: 296
- theoretical pI: 9.52074
- theoretical MW: 33320.2
- GRAVY: 1.03142
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Other auxin efflux carrier (TIGR00946; HMM-score: 42.9)
- TheSEED: see SACOL2248
- PFAM: CPA_AT (CL0064) Mem_trans; Membrane transport protein (PF03547; HMM-score: 30.8)and 1 moreno clan defined LapA_dom; Lipopolysaccharide assembly protein A domain (PF06305; HMM-score: 7.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 9
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.008046
- TAT(Tat/SPI): 0.000122
- LIPO(Sec/SPII): 0.006022
- predicted transmembrane helices (TMHMM): 9
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MIILLIALGYFLKRINFIKATDSQVIATLVLNVTLPSLVIVNLNSAELKLSFSILPILMIIYGIVAKMIAVWFFRKYDNHMRGSVGMMTGAMNIGLFAYPLIEVIWPKTGLIYFVMADIGGAFVMFGITYFVGSYFSEGSDQFDFKYLGKKLLQSVPLVTYIVMFILNISHIHLPHVAIDFFSILSHANMPLSMILLGVMLNFTLERKYIPATIKYLCLHYGLALVAGLLVYVLLPVSDDMIKTTLLVTWMFPVGVAIISYGIQFKYRTLPFIGMTTNLTIIISIIILYVYQAVFV
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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