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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS12190 [old locus tag: SACOL2318 ]
  • pan locus tag?: SAUPAN005806000
  • symbol: SACOL_RS12190
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS12190 [old locus tag: SACOL2318 ]
  • symbol: SACOL_RS12190
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2378844..2379350
  • length: 507
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (2378844..2379350) NCBI
  • BioCyc: SACOL_RS12190 BioCyc
  • MicrobesOnline: see SACOL2318

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    GTGGCAAAATTTAATGTAGAGAATGAACATGTCGAAGTTGAAATTGAAAAGCTTTATAAA
    TTTTCTCCAGAGTTAGTATACGAAGCTTGGACAAAGAAAGATTTGTTGAAACAATGGTTT
    ATGACATCAGCCAGAACGAATAAAGAGATTGAAGCGGACGTTAAAGAAGGCGGTAAATAT
    CGTATTGTAGATCAACAACGTAATGGCAAAGTAAATGTGATTGAAGGCATTTATGAATCT
    TTAGTTATGGATGAATACGTTAAGATGACTATCGGTATGCCTGGACTAAGTGAAACGCAA
    GATGTCATTGAGGTAGAATTTTTTGAACGTGAAACAGGTGGCACCCAAATGCTATTTTAT
    TATCGTTCATTAGTTGAAAAAGAAAGACGATTTACTAATTTAGAATACAAGCAAAAGAAA
    AAAGAATATCATGATGCCATGGTGCATGGTTTCGAATTGATGTTTGATAAGATGTACCAC
    GTTATCGAAACATCAACACAACAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    507

⊟Protein[edit | edit source]

Protein Data Bank: 2IL5

⊟General[edit | edit source]

  • locus tag: SACOL_RS12190 [old locus tag: SACOL2318 ]
  • symbol: SACOL_RS12190
  • description: hypothetical protein
  • length: 168
  • theoretical pI: 5.01663
  • theoretical MW: 20082.8
  • GRAVY: -0.67381

⊟Function[edit | edit source]

  • TIGRFAM:
    Hypothetical proteins Conserved Gemmata obscuriglobus paralogous family TIGR03066 (TIGR03066; HMM-score: 17.7)
  • TheSEED: see SACOL2318
  • PFAM:
    Bet_V_1_like (CL0209) AHSA1; Activator of Hsp90 ATPase homolog 1-like protein (PF08327; HMM-score: 93.1)
    and 2 more
    no clan defined DUF3212; Protein of unknown function (DUF3212) (PF11486; HMM-score: 18.1)
    YfbU; YfbU domain (PF03887; HMM-score: 15.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003562
    • TAT(Tat/SPI): 0.000404
    • LIPO(Sec/SPII): 0.000414
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MAKFNVENEHVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKVNVIEGIYESLVMDEYVKMTIGMPGLSETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIETSTQQ

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL2318
  • protein localization: see SACOL2318
  • quantitative data / protein copy number per cell: see SACOL2318
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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