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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS13085 [old locus tag: SACOL2497 ]
  • pan locus tag?: SAUPAN006078000
  • symbol: SACOL_RS13085
  • pan gene symbol?: —
  • synonym:
  • product: tandem-type lipoprotein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS13085 [old locus tag: SACOL2497 ]
  • symbol: SACOL_RS13085
  • product: tandem-type lipoprotein
  • replicon: chromosome
  • strand: -
  • coordinates: 2549163..2549948
  • length: 786
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (2549163..2549948) NCBI
  • BioCyc: SACOL_RS13085 BioCyc
  • MicrobesOnline: see SACOL2497

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGATTCATTCAAAGAAATTAACGCTCGGTATATGTTTGGTATTACTCATTATATTGATT
    GGAGGTTGTGTCATTATGACAAAAACAAATGGTCGAAACGCTCAAATTAAAGAAAATTTC
    AACAAAACATTAAGTGTATATCCAACCAAGAATCTCGATGATTTTTACGATAAGGAAGGT
    TTTCGAGATCAAGAATTTGATAAAAGAGATAAAGGGACTTGGATTATTTATTCTGAAATG
    GTTATCGAACCAAAAGGGAAAAATATGGAATCGAGAGGAATGGTGCTCTATATCAATCGC
    AATACTAGAACAACGAAGGGTAATTTTATTGTCACCGAAATAACTGAAGATAGTAAAGGA
    TATTCACGTAGTAAAGAAAAAAAATATCCTGTCAAGATGGAAAATAATCGAATTATTCCA
    ACAAAGCCTATACCGGATGACAAGTTAAAAAAAGAGATTGAAAACTTTAAGTTCTTTGTA
    CAATATGGAAATTTTAAAGATTTTAAAGATTATAAAAATGGTGATATTTCATATAATCCT
    AATGTGCCAAGTTATTCTGCAAAGTATCAATTGAATAATGATGACTATAATGTTCAACAG
    TTAAGAAAACGATATCATATTCCAACCAAACAAGCGCCCGAATTAAAATTGAAAGGATCC
    GGCAATTTAAAAGGCTCATCCGTAGGATCTAAGGATCTAGAATTTACGTTTGTAGAAAAT
    CAAGAAGAGAATATCTATTTTTCAGATTCGGTCGAATTTACACCTAGCGAGGATGATAAA
    TCATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    786

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS13085 [old locus tag: SACOL2497 ]
  • symbol: SACOL_RS13085
  • description: tandem-type lipoprotein
  • length: 261
  • theoretical pI: 9.36978
  • theoretical MW: 30309.2
  • GRAVY: -0.828353

⊟Function[edit | edit source]

  • TIGRFAM:
    Staphylococcus tandem lipoproteins (TIGR01742; HMM-score: 354.5)
  • TheSEED: see SACOL2497
  • PFAM:
    LolA_LolB (CL0048) DUF576; Csa1 family (PF04507; HMM-score: 444.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • LocateP:
  • SignalP: Signal peptide LIPO(Sec/SPII) length 22 aa
    • SP(Sec/SPI): 0.002892
    • TAT(Tat/SPI): 0.000058
    • LIPO(Sec/SPII): 0.996493
    • Cleavage Site: CS pos: 22-23. IGG-CV. Pr: 0.9969
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MIHSKKLTLGICLVLLIILIGGCVIMTKTNGRNAQIKENFNKTLSVYPTKNLDDFYDKEGFRDQEFDKRDKGTWIIYSEMVIEPKGKNMESRGMVLYINRNTRTTKGNFIVTEITEDSKGYSRSKEKKYPVKMENNRIIPTKPIPDDKLKKEIENFKFFVQYGNFKDFKDYKNGDISYNPNVPSYSAKYQLNNDDYNVQQLRKRYHIPTKQAPELKLKGSGNLKGSSVGSKDLEFTFVENQEENIYFSDSVEFTPSEDDKS

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL2497
  • protein localization: see SACOL2497
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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