From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS13355 [old locus tag: SACOL2551 ]
  • pan locus tag?: SAUPAN006191000
  • symbol: SACOL_RS13355
  • pan gene symbol?: —
  • synonym:
  • product: acyl-CoA thioester hydrolase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS13355 [old locus tag: SACOL2551 ]
  • symbol: SACOL_RS13355
  • product: acyl-CoA thioester hydrolase
  • replicon: chromosome
  • strand: -
  • coordinates: 2608181..2608591
  • length: 411
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (2608181..2608591) NCBI
  • BioCyc: SACOL_RS13355 BioCyc
  • MicrobesOnline: see SACOL2551

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGACAACAGAAGGTCTATTAGTTGCAGAGAAAGAAATCGAAGTGAATGGTTACGACATT
    GATGCGATGGGTGTCGTTAGTAATATCGTTTATATTAGATGGTTCGAAGATTTGAGAACA
    GCGTTTATTAATCAGCACATGAATTACTCAACAATGATCAATCAAGGCATTTCACCTATA
    CTTATGAAAACGGAAGCAGAGTATAAAGTACCTGTCACAATACATGACAAACCAGTAGGT
    CGTATTTACTTAGTTAAAGCAAGCAAGATGAAATGGGTGTTTCAGTTTGAAATTGTGTCC
    GCACATGGCGTGCATTGTATTGGTACACAGACAGGCGGTTTTTACAGATTGAGTGATAAG
    AAGATAACCTCTGTGCCACAAGTGTTTCAAGACATTTTAGCAACAAAATAA
    60
    120
    180
    240
    300
    360
    411

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS13355 [old locus tag: SACOL2551 ]
  • symbol: SACOL_RS13355
  • description: acyl-CoA thioester hydrolase
  • length: 136
  • theoretical pI: 7.6635
  • theoretical MW: 15444.9
  • GRAVY: 0.0161765

⊟Function[edit | edit source]

  • TIGRFAM:
    Unknown function General acyl-CoA thioester hydrolase, YbgC/YbaW family (TIGR00051; HMM-score: 42.9)
    and 1 more
    tol-pal system-associated acyl-CoA thioesterase (TIGR02799; EC 3.1.2.-; HMM-score: 26.3)
  • TheSEED: see SACOL2551
  • PFAM:
    HotDog (CL0050) 4HBT_2; Thioesterase-like superfamily (PF13279; HMM-score: 45.4)
    and 2 more
    4HBT; Thioesterase superfamily (PF03061; HMM-score: 23.1)
    Acyl-ACP_TE; Acyl-ACP thioesterase (PF01643; HMM-score: 13.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001366
    • TAT(Tat/SPI): 0.000103
    • LIPO(Sec/SPII): 0.000339
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTTEGLLVAEKEIEVNGYDIDAMGVVSNIVYIRWFEDLRTAFINQHMNYSTMINQGISPILMKTEAEYKVPVTIHDKPVGRIYLVKASKMKWVFQFEIVSAHGVHCIGTQTGGFYRLSDKKITSVPQVFQDILATK

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL2551
  • protein localization: see SACOL2551
  • quantitative data / protein copy number per cell: see SACOL2551
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SACOL_RS13355&oldid=78460"