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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS13765 [old locus tag: SACOL2630 ]
  • pan locus tag?: SAUPAN006316000
  • symbol: SACOL_RS13765
  • pan gene symbol?: —
  • synonym: cudC
  • product: GbsR/MarR family transcriptional regulator

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS13765 [old locus tag: SACOL2630 ]
  • symbol: SACOL_RS13765
  • product: GbsR/MarR family transcriptional regulator
  • replicon: chromosome
  • strand: +
  • coordinates: 2689706..2690269
  • length: 564
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (2689706..2690269) NCBI
  • BioCyc: SACOL_RS13765 BioCyc
  • MicrobesOnline: see SACOL2630

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGACTCGTTCTCAGAACAAACAGCAACAATTAGAACAAGCAAAAGATATTGTAATTAAT
    TCAATTGGACAGACAATGGATTTGTATGGCACTAATAGAAGTGTAGGAAACTTATATGGC
    ACAATGGTGTTTGAAGGCAGTATGACGCTTGATGAAATGCGTCATCAATTGCAAATGAGC
    AAACCAAGTATGAGTGCTGGCGTTAAGAAATTGCAGGAATTTGATATTGTTAAACAACAA
    TTTACGAGAGGAAGCCGCAAACAACATTTTATCGCCGAGAAAGACTTTTTCATCTTTTTC
    CGAAACTTTTTCACTAAAAAATTCCAGCGTGAAATTGACATCAATGTCGAAGCAGTAAAA
    GATGCTCAAGCTATTATCAATTCATTACTTGAAAGCAGTGATTTAACTGAAGCTGAAACA
    CAAGAGGCACAAAAAATTAAAGCTCAGCTTGATCATACACATGTTTATTACGAATGGTTA
    GAACAGTTAACCGAAGCGATTGAAAGCGGTGAAATTTTCAAATATTTCCCAATTCCAGAA
    CAGCCTTCTGATTCTGAAAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    564


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS13765 [old locus tag: SACOL2630 ]
  • symbol: SACOL_RS13765
  • description: GbsR/MarR family transcriptional regulator
  • length: 187
  • theoretical pI: 4.9468
  • theoretical MW: 21732.3
  • GRAVY: -0.627807

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Amino acid biosynthesis Aromatic amino acid family anthranilate synthase component I (TIGR01820; EC 4.1.3.27; HMM-score: 15.7)
    and 1 more
    Signal transduction Regulatory functions DNA interactions CRISPR locus-related DNA-binding protein (TIGR01884; HMM-score: 11.9)
  • TheSEED: see SACOL2630
  • PFAM:
    HTH (CL0123) MarR_2; MarR family (PF12802; HMM-score: 12.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8742
    • Cytoplasmic Membrane Score: 0.1189
    • Cell wall & surface Score: 0.0004
    • Extracellular Score: 0.0064
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005378
    • TAT(Tat/SPI): 0.002829
    • LIPO(Sec/SPII): 0.000599
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTRSQNKQQQLEQAKDIVINSIGQTMDLYGTNRSVGNLYGTMVFEGSMTLDEMRHQLQMSKPSMSAGVKKLQEFDIVKQQFTRGSRKQHFIAEKDFFIFFRNFFTKKFQREIDINVEAVKDAQAIINSLLESSDLTEAETQEAQKIKAQLDHTHVYYEWLEQLTEAIESGEIFKYFPIPEQPSDSEN

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL2630
  • protein localization: see SACOL2630
  • quantitative data / protein copy number per cell: see SACOL2630
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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