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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL_RS13845 [old locus tag: SACOL2643 ]
- pan locus tag?: SAUPAN006334000
- symbol: SACOL_RS13845
- pan gene symbol?: braE
- synonym: nsaB
- product: ABC transporter permease
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL_RS13845 [old locus tag: SACOL2643 ]
- symbol: SACOL_RS13845
- product: ABC transporter permease
- replicon: chromosome
- strand: -
- coordinates: 2702905..2704905
- length: 2001
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1981ATGAAGTTAAGATTGTTATGGCACATAGTGCGACGTCAATTTATTACGCAGCGACTTGTA
ATCATTCCATTCATTTTAGCGGTAAGTGTACTATTCATGATTGAATATACGCTTGTGTCA
ATTGGGTTAAATAGCTACATAAAACAGAAGAATGACTTCCTAGTACCATTTATTATCATA
GCTAATTTTTTTATGGCGCTTTTAACTTTTATTTTTATTTTCTATGCAAATCACTTTATG
ATGTCACAAAGACGAAAAGAGTTTAGCATTTTTATGACATTGGGCATGACCAAGAAAAGT
ATGCGTTTAATTGTAGTGATGGAAACTATCTTACAATTTGTGATAATTTCAGTCGTTAGT
ATTGCCGGCGGATACTTACTTGGTGCGATATTTTTCTTGTTTATACAGAAAATAATGGGC
AGTGAAGTTGCGACGTTAAGGTATTATCCATTTGACTCTGTAGCGATGTTTATTACTTTG
ATTATCATTGCTGTATTAATGGGCATGCTACTTATATTCAACTTGTTTAGTATTAATTTT
CAACGGCCGATAACTTATCAACATCGTTCCGATTCTAGTGTCATATCACGATGGTTGCGT
TACGTTTTAATTGTTATAGGAAGCGCAGCACTATATTTAGGTTACTTTATTGCATTACAA
CAAGATACGACGTTTGGTGCCTTTTTTAAAATATGGATTGTCATAGGATTAGTTATTATC
GGTACTTATGCATTTTTTGTAGGTATAAGTGAAATAATTATTAGTATATTGCAGCAGGTA
TCAAAAGTTTACTATCATCCACGGTATTTTTTTGTGGTAGTTGGGATGCGTGTACGTCTT
AAAATGAATGCAGTCAGTCTTGCAACAATCACTTTGCTGTGTACATTTTTGATTGTAACG
CTCACAATGACATTAACAACCTATCGTGATATGAATCATACCATTACGAAATTGATTACG
AATGATTATGATTTGTCATTTAGCGACAATTCTAAGTCACAAATAGAACGTCAACAAACA
ATTGAGAATATTAAACGTGATATACAGGGTTCGGTTAATGCAAAAGACTTCAAAGTATAT
GAAACGACATTATTTAGAGCTTCTTTAGAAAAGAATCGTGCTTATTACAAGTTAAAACAG
GCTAGTGATGATATTCCAATAGACTTCATTGGTAATGAAGGCGCGATATTTTCAAGACAA
TCAGTAATGATTACAGCTTTTACTGCACAAGATTATAATCGATATCACCAAAACAAATTA
CACTTAGACAATCAAAGTATAGGTATGATTACGAATGTACCTATTTTTAAAAAGCAGTCT
AAGGTCGGTCTTAATAATGAAGTCTTTAAAGTGAAACAACTTGACGCACATGCGTTAAAT
TTGATGATGATTCAAGATAGTATGGTTTTAATTGTTAAAGATAACAATCAATTACAAAAA
GTAAAAGGATTTTATGCACATGAACAAAAGAATTCGACAATATCGATAAACTTTAATGTA
TTTGGAAAGACGAAATTAACAACATCACAAATACAAAAGCTATCGAAAAAATACGATGCG
TCAATAAATTCTAAATCAGAAATGCTAATGGTTTGGGATCGTTTGACAGGTGGACTAATA
TTTGTAGGTGGCGTAGTATCAATTGTACTTGTCATTGGAATATTTCTAATGATGTATTAT
AAACAAGTCTCAGAAGCCTATGCAAATCAGCACAATTATGACATTATGAAAAAACTTGGT
TTAGATAATGGAAGAATAGCAAAGATAACACGAAATCAAATGACTTTCTTGTTCGCAATA
CCAATAACAGTAGCACTGATTCACACATTAATTTCTAGTAACATTGTATATACGTTACTA
AATATGATAGGTATTAATAACCATCATATATTTTTAACAAGTTACGTACTAGCTGTCATT
ATAATTTCGTTTCTATATATGGCGATGTACAAAATAACTTCCTATATTTATGCTAAAGTT
ATTCATCAACAACGCAATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL_RS13845 [old locus tag: SACOL2643 ]
- symbol: SACOL_RS13845
- description: ABC transporter permease
- length: 666
- theoretical pI: 10.2436
- theoretical MW: 76732.6
- GRAVY: 0.434535
⊟Function[edit | edit source]
- TIGRFAM: acidobacterial duplicated orphan permease (TIGR03434; HMM-score: 3.9)
- TheSEED: see SACOL2643
- PFAM: BPD_transp_1 (CL0404) FtsX; FtsX-like permease family (PF02687; HMM-score: 39.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 10
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003119
- TAT(Tat/SPI): 0.000211
- LIPO(Sec/SPII): 0.008631
- predicted transmembrane helices (TMHMM): 10
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKLRLLWHIVRRQFITQRLVIIPFILAVSVLFMIEYTLVSIGLNSYIKQKNDFLVPFIIIANFFMALLTFIFIFYANHFMMSQRRKEFSIFMTLGMTKKSMRLIVVMETILQFVIISVVSIAGGYLLGAIFFLFIQKIMGSEVATLRYYPFDSVAMFITLIIIAVLMGMLLIFNLFSINFQRPITYQHRSDSSVISRWLRYVLIVIGSAALYLGYFIALQQDTTFGAFFKIWIVIGLVIIGTYAFFVGISEIIISILQQVSKVYYHPRYFFVVVGMRVRLKMNAVSLATITLLCTFLIVTLTMTLTTYRDMNHTITKLITNDYDLSFSDNSKSQIERQQTIENIKRDIQGSVNAKDFKVYETTLFRASLEKNRAYYKLKQASDDIPIDFIGNEGAIFSRQSVMITAFTAQDYNRYHQNKLHLDNQSIGMITNVPIFKKQSKVGLNNEVFKVKQLDAHALNLMMIQDSMVLIVKDNNQLQKVKGFYAHEQKNSTISINFNVFGKTKLTTSQIQKLSKKYDASINSKSEMLMVWDRLTGGLIFVGGVVSIVLVIGIFLMMYYKQVSEAYANQHNYDIMKKLGLDNGRIAKITRNQMTFLFAIPITVALIHTLISSNIVYTLLNMIGINNHHIFLTSYVLAVIIISFLYMAMYKITSYIYAKVIHQQRN
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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