Jump to navigation
Jump to search
NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_2521 [new locus tag: NWMN_RS14490 ]
- pan locus tag?: SAUPAN006334000
- symbol: NWMN_2521
- pan gene symbol?: braE
- synonym: nsaB
- product: ABC transporter permease
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_2521 [new locus tag: NWMN_RS14490 ]
- symbol: NWMN_2521
- product: ABC transporter permease
- replicon: chromosome
- strand: -
- coordinates: 2772322..2774322
- length: 2001
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5331571 NCBI
- RefSeq: YP_001333555 NCBI
- BioCyc:
- MicrobesOnline: 3708123 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981ATGAAGTTAAGATTGTTATGGCACATAGTGCGACGTCAATTTATTACGCAGCGACTTGTA
ATCATTCCATTCATTTTAGCGGTAAGTGTACTATTCATGATTGAATATACGCTTGTGTCA
ATTGGGTTAAATAGCTACATAAAACAGAAGAATGACTTCCTAGTACCATTTATTATCATA
GCTAATTTTTTTATGGCGCTTTTAACTTTTATTTTTATTTTCTATGCAAATCACTTTATG
ATGTCACAAAGACGAAAAGAGTTTAGCATTTTTATGACATTGGGCATGACCAAGAAAAGT
ATGCGTTTAATTGTAGTGATGGAAACTATCTTACAATTTGTGATAATTTCAGTCGTTAGT
ATTGCCGGCGGATACTTACTTGGTGCGATATTTTTCTTGTTTATACAGAAAATAATGGGC
AGTGAAGTTGCGACGTTAAGGTATTATCCATTTGACTCTGTAGCGATGTTTATTACTTTG
ATTATCATTGCTGTATTAATGGGCATGCTACTTATATTCAACTTGTTTAGTATTAATTTT
CAACGGCCGATAACTTATCAACATCGTTCCGATTCTAGTGTCATATCACGATGGTTGCGT
TACGTTTTAATTGTTATAGGAAGCGCAGCACTATATTTAGGTTACTTTATTGCATTACAA
CAAGATACGACGTTTGGTGCCTTTTTTAAAATATGGATTGTCATAGGATTAGTTATTATC
GGTACTTATGCATTTTTTGTAGGTATAAGTGAAATAATTATTAGTATATTGCAGCAGGTA
TCAAAAGTTTACTATCATCCACGGTATTTTTTTGTGGTAGTTGGGATGCGTGTACGTCTT
AAAATGAATGCAGTCAGTCTTGCAACAATCACTTTGCTGTGTACATTTTTGATTGTAACG
CTCACAATGACATTAACAACCTATCGTGATATGAATCATACCATTACGAAATTGATTACG
AATGATTATGATTTGTCATTTAGCGACAATTCTAAGTCACAAATAGAACGTCAACAAACA
ATTGAGAATATTAAACGTGATATACAGGGTTCGGTTAATGCAAAAGACTTCAAAGTATAT
GAAACGACATTATTTAGAGCTTCTTTAGAAAAGAATCGTGCTTATTACAAGTTAAAACAG
GCTAGTGATGATATTCCAATAGACTTCATTGGTAATGAAGGCGCGATATTTTCAAGACAA
TCAGTAATGATTACAGCTTTTACTGCACAAGATTATAATCGATATCACCAAAACAAATTA
CACTTAGACAATCAAAGTATAGGTATGATTACGAATGTACCTATTTTTAAAAAGCAGTCT
AAGGTCGGTCTTAATAATGAAGTCTTTAAAGTGAAACAACTTGACGCACATGCGTTAAAT
TTGATGATGATTCAAGATAGTATGGTTTTAATTGTTAAAGATAACAATCAATTACAAAAA
GTAAAAGGATTTTATGCACATGAACAAAAGAATTCGACAATATCGATAAACTTTAATGTA
TTTGGAAAGACGAAATTAACAACATCACAAATACAAAAGCTATCGAAAAAATACGATGCG
TCAATAAATTCTAAATCAGAAATGCTAATGGTTTGGGATCGTTTGACAGGTGGACTAATA
TTTGTAGGTGGCGTAGTATCAATTGTACTTGTCATTGGAATATTTCTAATGATGTATTAT
AAACAAGTCTCAGAAGCCTATGCAAATCAGCACAATTATGACATTATGAAAAAACTTGGT
TTAGATAATGGAAGAATAGCAAAGATAACACGAAATCAAATGACTTTCTTGTTCGCAATA
CCAATAACAGTAGCACTGATTCACACATTAATTTCTAGTAACATTGTATATACGTTACTA
AATATGATAGGTATTAATAACCATCATATATTTTTAACAAGTTACGTACTAGCTGTCATT
ATAATTTCGTTTCTATATATGGCGATGTACAAAATAACTTCCTATATTTATGCTAAAGTT
ATTCATCAACAACGCAATTAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
1020
1080
1140
1200
1260
1320
1380
1440
1500
1560
1620
1680
1740
1800
1860
1920
1980
2001
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_2521 [new locus tag: NWMN_RS14490 ]
- symbol: NWMN_2521
- description: ABC transporter permease
- length: 666
- theoretical pI: 10.2436
- theoretical MW: 76732.6
- GRAVY: 0.434535
⊟Function[edit | edit source]
- TIGRFAM: acidobacterial duplicated orphan permease (TIGR03434; HMM-score: 3.9)
- TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
- PFAM: BPD_transp_1 (CL0404) FtsX; FtsX-like permease family (PF02687; HMM-score: 39.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 10
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003119
- TAT(Tat/SPI): 0.000211
- LIPO(Sec/SPII): 0.008631
- predicted transmembrane helices (TMHMM): 10
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKLRLLWHIVRRQFITQRLVIIPFILAVSVLFMIEYTLVSIGLNSYIKQKNDFLVPFIIIANFFMALLTFIFIFYANHFMMSQRRKEFSIFMTLGMTKKSMRLIVVMETILQFVIISVVSIAGGYLLGAIFFLFIQKIMGSEVATLRYYPFDSVAMFITLIIIAVLMGMLLIFNLFSINFQRPITYQHRSDSSVISRWLRYVLIVIGSAALYLGYFIALQQDTTFGAFFKIWIVIGLVIIGTYAFFVGISEIIISILQQVSKVYYHPRYFFVVVGMRVRLKMNAVSLATITLLCTFLIVTLTMTLTTYRDMNHTITKLITNDYDLSFSDNSKSQIERQQTIENIKRDIQGSVNAKDFKVYETTLFRASLEKNRAYYKLKQASDDIPIDFIGNEGAIFSRQSVMITAFTAQDYNRYHQNKLHLDNQSIGMITNVPIFKKQSKVGLNNEVFKVKQLDAHALNLMMIQDSMVLIVKDNNQLQKVKGFYAHEQKNSTISINFNVFGKTKLTTSQIQKLSKKYDASINSKSEMLMVWDRLTGGLIFVGGVVSIVLVIGIFLMMYYKQVSEAYANQHNYDIMKKLGLDNGRIAKITRNQMTFLFAIPITVALIHTLISSNIVYTLLNMIGINNHHIFLTSYVLAVIIISFLYMAMYKITSYIYAKVIHQQRN
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.