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NCBI: 03-AUG-2016
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus NCTC8325
- locus tag: SAOUHSC_00593
- pan locus tag?: SAUPAN002448000
- symbol: SAOUHSC_00593
- pan gene symbol?: —
- synonym:
- product:
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: pseudogene
- locus tag: SAOUHSC_00593
- symbol: SAOUHSC_00593
- product:
- replicon: chromosome
- strand: +
- coordinates: 591277..591905
- length: 629
- essential: no DEG
⊟Accession numbers[edit | edit source]
- Gene ID: 3920516 NCBI
- RefSeq:
- BioCyc: G1I0R-557 BioCyc
- MicrobesOnline: 1289069 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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601GTGCTTTGTGAATCTAGACAAATTTATAAAAATCCTAAATATCGAGTTATTAGATATAAT
AATGAATATTTCATGGTCGATTTAGTAAGTACTTGGATTACTTATTTTTTCCCTATGATT
AATTGGTTTTTGCCCAAAAAATACGCAAAAATTAGCGAAAATGAATTTGAAAGGTTAAAT
ATAGTCGAGCCTGTTAAAAATAATGTTTTTTGGCCGGTTGCAGGAAGTTCAGTTCTATTT
GGAATTATATTGAGAAAGTACGGTAACTTCTTTAATGTTCAGTTTGAAAAACAACTAGCA
ATCACTGTATTTTTTATCATGTTAATAGGGATGTTAATTTTTTATTTTTATCTAAATAAA
AAATTAACATTAAAAATTTTTAATACCAACGTGGTTAATAAGAATAGAGTTGTATTAATA
CCGACTTTCAAACAAGGATTGTTAATAGTTTTTGCGTACTTTTTTTAGGAAGCGCTTCAA
TATTTACTTTAACCATTCTTTTGACGACAGAGTCACAAAATATAATAATATTTTTAACTT
GGGTTATTATCACGATGTTTTTCTTTTTAGTGAATATGGCTTCGATAGGTAATAAAAATG
TTCATGTTATTTTAAGAATAAACGAGTAG60
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629
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAOUHSC_00593
- symbol: SAOUHSC_00593
- description:
- length:
- theoretical pI:
- theoretical MW:
- GRAVY:
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb:
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP:
- predicted transmembrane helices (TMHMM):
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization: data available for COL
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- predicted SigA promoter [1] : S216 > SAOUHSC_00584 > S217 > SAOUHSC_00585 > S218 > SAOUHSC_00586 > S219 > SAOUHSC_00587 > SAOUHSC_00588 > SAOUHSC_00589 > SAOUHSC_00591 > SAOUHSC_00592 > SAOUHSC_00593
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: [1]
Multi-gene expression profiles
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ 1.0 1.1 Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
PLoS Genet: 2016, 12(4);e1005962
[PubMed:27035918] [WorldCat.org] [DOI] (I e)