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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 03-AUG-2016

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_00593
  • pan locus tag?: SAUPAN002448000
  • symbol: SAOUHSC_00593
  • pan gene symbol?: —
  • synonym:
  • product:

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: pseudogene
  • locus tag: SAOUHSC_00593
  • symbol: SAOUHSC_00593
  • product:
  • replicon: chromosome
  • strand: +
  • coordinates: 591277..591905
  • length: 629
  • essential: no DEG

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    GTGCTTTGTGAATCTAGACAAATTTATAAAAATCCTAAATATCGAGTTATTAGATATAAT
    AATGAATATTTCATGGTCGATTTAGTAAGTACTTGGATTACTTATTTTTTCCCTATGATT
    AATTGGTTTTTGCCCAAAAAATACGCAAAAATTAGCGAAAATGAATTTGAAAGGTTAAAT
    ATAGTCGAGCCTGTTAAAAATAATGTTTTTTGGCCGGTTGCAGGAAGTTCAGTTCTATTT
    GGAATTATATTGAGAAAGTACGGTAACTTCTTTAATGTTCAGTTTGAAAAACAACTAGCA
    ATCACTGTATTTTTTATCATGTTAATAGGGATGTTAATTTTTTATTTTTATCTAAATAAA
    AAATTAACATTAAAAATTTTTAATACCAACGTGGTTAATAAGAATAGAGTTGTATTAATA
    CCGACTTTCAAACAAGGATTGTTAATAGTTTTTGCGTACTTTTTTTAGGAAGCGCTTCAA
    TATTTACTTTAACCATTCTTTTGACGACAGAGTCACAAAATATAATAATATTTTTAACTT
    GGGTTATTATCACGATGTTTTTCTTTTTAGTGAATATGGCTTCGATAGGTAATAAAAATG
    TTCATGTTATTTTAAGAATAAACGAGTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    629


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAOUHSC_00593
  • symbol: SAOUHSC_00593
  • description:
  • length:
  • theoretical pI:
  • theoretical MW:
  • GRAVY:

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • repetative hypothetical protein , fig|282458.1.peg.574 homolog
  • PFAM:

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb:
  • DeepLocPro:
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP:
  • predicted transmembrane helices (TMHMM):

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt: Q2G0H3 UniProt
  • STRING: 93061.SAOUHSC_00593 STRING

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • data available for JSNZ

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ 1.0 1.1 Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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