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NCBI: 03-AUG-2016

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_01133
  • pan locus tag?: SAUPAN003435000
  • symbol: SAOUHSC_01133
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAOUHSC_01133
  • symbol: SAOUHSC_01133
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1086147..1087094
  • length: 948
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGAGACTTCAAAAAGCACCTCTAGTAACGTCAGGACTAGTCTTAGGATTATTAGGCCTG
    GGTAATCTATTAAAAGACTTATCTCTTACTTTAAACGCTGTTTGCGGAATCTTTGCTTTC
    TTGATTTGGATTCACCTTTTATGTACTATGATCAAATATTTTAATAATGTGAAAGAACAA
    TTAAACAGTCCTCTAGTTTCATCAGTGTTCACAACATTTTTCATGTCTGGCTTTTTAGGT
    ACTACTTATTTAAATACATTTTTTAGTAACATAACTTTTATCAATAGCTTAATAACGCCT
    ATTTGGATTTTATGCCTTGTGGGAATTATGACGCATATGATTATTTTTTCAATAAAATAT
    TTAAAAGATTTTTCACTTGAAAATGTTTATCCTTCGTGGACTGTACTTTTTATTGGTATT
    GCTATCGCAGGATTGACGGCACCCGTTAGCGGATATTTTTTCATAGGTCAATTAACAGTA
    ATATATGGCTTTGTAGCTACTTGTATTGTCTTACCTATAGTTTTCAAGCGATTAAAAGCA
    TTTCCATTGCAGACGTCAATCAAACCGAACACATCGACAATTTGTGCACCATTTTCTTTA
    GTCGCTGCAGCATATGTTATAGCTTTTCCTAAGGCGAATGCTTTTATCGTAATTATATTT
    TTACTATTAGCTCAAATATTTTATTTTTATATCATTATACAATTGCCTAAATTACTAAAA
    GAACCTTTTTCGCCCGTATTTTCAGCTTTCACATTCCCTTTAGTAATCTCAGCAACTGCT
    TTAAAGAACAGTTTGCCTGTACTTATGTTTCCAGACATTTGGAAAGGTCTTTTGTTTATC
    GAAGTGTTATTAGCCACTGTAATAGTACTTAGAGTCTTTATAGGATATCTTCACTTCTTT
    TTAAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    948


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAOUHSC_01133
  • symbol: SAOUHSC_01133
  • description: hypothetical protein
  • length: 315
  • theoretical pI: 10.026
  • theoretical MW: 35310.5
  • GRAVY: 1.01492

⊟Function[edit | edit source]

  • TIGRFAM:
    undecaprenyl-phosphate glucose phosphotransferase (TIGR03023; EC 2.7.8.-; HMM-score: 3.6)
  • TheSEED  :
    • putative permease
  • PFAM:
    no clan defined SLAC1; Voltage-dependent anion channel (PF03595; HMM-score: 51.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9991
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0009
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.029806
    • TAT(Tat/SPI): 0.000796
    • LIPO(Sec/SPII): 0.047632
  • predicted transmembrane helices (TMHMM): 10

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQLNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKYLKDFSLENVYPSWTVLFIGIAIAGLTAPVSGYFFIGQLTVIYGFVATCIVLPIVFKRLKAFPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLLLAQIFYFYIIIQLPKLLKEPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFFLKKEKQDKFLRNASQ

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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