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NCBI: 03-AUG-2016

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_02902
  • pan locus tag?: SAUPAN006261000
  • symbol: SAOUHSC_02902
  • pan gene symbol?: —
  • synonym:
  • product:

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: pseudogene
  • locus tag: SAOUHSC_02902
  • symbol: SAOUHSC_02902
  • product:
  • replicon: chromosome
  • strand: -
  • coordinates: 2671337..2672676
  • length: 1340
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGTTAGAAGTGAAATATGATATGAGAACTGGGCATTATACGCCCATACCTAATGAACCT
    CATTATTTGGTTATTAGTCATGCGGATAAACTTACCGCAACAGAAAAAGCGAAATTAAGA
    TTATTAATCATAAAACAGAAATTAGATATTTCATTGGCAGAAAGTGTAGTTTCTTCGCCT
    ATAGCGAGTGAACATGTGATAGAACAATTGACACTATTTCAACATGAGCGACGACATTTA
    AGACCTAAAATAAGTGCGACATTTTTAGCCTGGTTGTTGATATTTTTAATGTTTGCATTG
    CCAATCGGTATCGCTTATCAATTTTCAGATTGGTTTCAAAATCAGTATGTGTCAGCATGG
    ATAGAATATTTAACTCAAACAACATTGCTCAATCACGATATATTACAGCATATATTATTT
    GGTGATTATGGTGTGCTATCACTTGGAACATATTCGCTCGTATGGGCATTGCCGGTTGTA
    ATATTGATTAGTTTATCAACTGCTATAATTGATCAAACAGGACTCAAATCATGGATGATA
    TGGGCAATTGAACCGTCAATGTTATGGATAGGATTACAAGGTAATGATATCGTGCCACTA
    TTAGAAGGGTTTGGATGTAATGCAGCAGCTATTTCACAAGCAGCACACCAATGCCATACC
    TGCACGAAGACACAGTGTATGAGTTTAATAAGCTTTGGTAGTTCTTGTAGTTATCAAATA
    GGTGCGACATTATCTATTTTTAGTGTAGCTGGAAAGTCATGGCTATTTATGCCGTACTTA
    ATATTAGTACTTTTAGGTGGCATCTTACATAAAGGATATGGTTGAAAAAGAATGATCAAC
    AACTTAGCGTTCCGCTACCTTATGATAGGCAATTACATATGCCAAATATACGTCAAATGT
    TGCTACAAATGTGGCAAAATATACAAATGTTTATCGTTCAAGCGCTACCTATTTTTATCA
    CAATCTGTCTTATTGTTAGTATTTTATCACTAACGCCAATTTTGAATGTTTTATCACAAA
    TATTTACACCTATATTATCGTTATTAGGCATCTCGTCAGAATTGTCACCAGGGATTTTAT
    TTTCAATGATTCGAAAAGACGGCATGCTCTTGTTTAATTTGCATCAGGGCGCCTTATTAC
    AAGGAATGACAGCAACACAGTTACTACTACTTGTGTTTTTTAGTTCAACATTTACAGCGT
    GCTCGGTCACAATGACGATGCTTTTGAAACATTTAGGTGGTCAGTCAGCACTAAAATTAA
    TTGGAAAGCAAATGGTGACATCATTGTCTTTAGTTATTGGTGTAGGCATCATTGTTAAAA
    TAGTAATGCTGATTATTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1340

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAOUHSC_02902
  • symbol: SAOUHSC_02902
  • description:
  • length:
  • theoretical pI:
  • theoretical MW:
  • GRAVY:

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • transporter gate domain protein
  • PFAM:

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb:
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP:
  • predicted transmembrane helices (TMHMM):

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt: Q2FV37 UniProt
  • STRING: 93061.SAOUHSC_02902 STRING

⊟Protein sequence[edit | edit source]

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: Zur* (repression) regulon
    Zur*(TF)important in Zinc homeostasis; RegPrecise    transcription unit transferred from N315 data RegPrecise 

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ 1.0 1.1 Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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