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⊟Summary[edit | edit source]
- pan ID?: SAUPAN000040000
- symbol?: orfX
- synonym: rlmH
- description?: 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
- 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
- rRNA large subunit methyltransferase
- rRNA large subunit methyltransferase H
- alpha/beta knot family protein
- LSU m3Psi1915 methyltransferase RlmH
- LSU m3Psi1915 methyltransferase RlmH ybeA
- ribosomal RNA large subunit methyltransferase H
- rRNA large subunit m3Psi methyltransferase RlmH
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 40139..40622
- synteny block?: BlockID0000370
- occurrence?: in 91% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0024 (orfX)
08BA02176:
C248_0027
11819-97:
MS7_0026 (rlmH)
6850:
RSAU_000027 (rlmH)
71193:
ST398NM01_0027
ECT-R 2:
ECTR2_27
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_00240
JH1:
SaurJH1_0024
JH9:
SaurJH9_0024
JKD6008:
SAA6008_00025
JKD6159:
SAA6159_00024
LGA251:
SARLGA251_00240
M013:
M013TW_0027
MRSA252:
SAR0024
MSHR1132:
SAMSHR1132_00250
MSSA476:
SAS0024
Mu3:
SAHV_0024
Mu50:
SAV0024
MW2:
MW0024 (orfX)
RF122:
SAB0024
ST398:
SAPIG0027
T0131:
SAT0131_00027 (cmk)
TCH60:
HMPREF0772_10443
TW20:
SATW20_00250
USA300_TCH1516:
USA300HOU_0024 (orfX)
VC40:
SAVC_00120
⊟Genome Viewer[edit | edit source]
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
N315 MKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEG
NCTC8325 MKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEG
Newman MKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEG
USA300_FPR3757 MKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEG
************************************************************
N315 QRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQR
NCTC8325 QRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQR
Newman QRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQR
USA300_FPR3757 QRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQR
************************************************************
N315 SNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAYHK
NCTC8325 SNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAYHK
Newman SNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAYHK
USA300_FPR3757 SNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAYHK
***************************************