PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000103000
• symbol^?: rplL
• synonym:
• description^?: type I restriction endonuclease

  descriptions from strain specific annotations:

  • type I restriction endonuclease
  • 50S ribosomal protein L7/L12
  • pseudogene
  • type I site-specific deoxyribonuclease restriction subunit
• strand^?: +
• coordinates^?: 122711..125384
• synteny block^?: BlockID0000810
• occurrence^?: in 27% of 33 strains

⊟Orthologs

COL:
SACOL0035
N315:
—
NCTC8325:
—
Newman:
—
USA300_FPR3757:
SAUSA300_0035
04-02981:
—
08BA02176:
—
11819-97:
MS7_0035
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_00321
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
SAA6159_00033
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
SAMSHR1132_00340
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
MW0033 (hsdR)
RF122:
—
ST398:
—
T0131:
—
TCH60:
HMPREF0772_10433 (rplL)
TW20:
—
USA300_TCH1516:
USA300HOU_0033 (hsdR1)
VC40:
—

⊟Genome Viewer

COL
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MYVVYRASHETAKEALGDKELRAIAHELTKTVKDNMSVDWSKRDSAKAKMRVQVRRLLKK
  USA300_FPR3757  ---------------MGDKELRAIAHELTKTVKDNMSVDWSKRDSAKAKMRVQVRRLLKK
                                 :********************************************
  
  COL             YGYPPDLQKMAVEQVVEQAELMASQQ
  USA300_FPR3757  YGYPPDLQKMAVEQVVEQAELMASQQ
                  **************************