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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary[edit | edit source]

  • pan ID?: SAUPAN000133000
  • symbol?: —
  • synonym:
  • description?: hypothetical protein
  • strand?: -
  • coordinates?: 157284..157622
  • synteny block?: BlockID0001070
  • occurrence?: in 44% of 34 strains

⊟Additional information (user-provided)[edit | edit source]

⊟Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    —
    Newman:
    —
    USA300_FPR3757:
    JSNZ:
    —
    04-02981:
    SA2981_0060
    08BA02176:
    C248_0047
    11819-97:
    —
    6850:
    —
    71193:
    —
    ECT-R 2:
    —
    ED133:
    —
    ED98:
    —
    HO 5096 0412:
    —
    JH1:
    SaurJH1_0048
    JH9:
    SaurJH9_0047
    JKD6008:
    —
    JKD6159:
    —
    LGA251:
    —
    M013:
    M013TW_0057
    MRSA252:
    SAR0058
    MSHR1132:
    —
    MSSA476:
    SAS0031
    Mu3:
    SAHV_0059
    Mu50:
    SAV0060
    MW2:
    —
    RF122:
    —
    ST398:
    SAPIG0051
    T0131:
    —
    TCH60:
    —
    TW20:
    SATW20_00350
    USA300_TCH1516:
    USA300HOU_0064
    VC40:
    —

⊟Genome Viewer[edit | edit source]

COL
N315
USA300_FPR3757

⊟Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.505)


    COL             MKTTTQELKQYITRLFQLSNNETWECEALEEAAENILPTRFVDHTPLAHLTLDTYTYYND
    N315            MKTTTQELKQYITRLFQLSNNETWECEALEEAAENILPERFINDSPLAHLTLETYTYYNN
    USA300_FPR3757  MKTTTQELKQYMTRLFQLSNNETWECETLEEAAENILPKRFINDSPLAHLILETYTYYNN
                    ***********:***************:********** **::.:***** *:******:

    COL             ELHELSIYPFLMYTNNQLISIGYLDHFDMDFLYLTDTKNTIIDERHLLKEGGTRHE
    N315            ELHDLSIYPFLMYANNQLISVGYLNHFDMDFLYLTDTKNTIIDERHLLREGGTHHE
    USA300_FPR3757  ELHELSIYPFLMYSNNQLISIGYLDHFDMDFLYLTDTKNTIIDERHLLKEGGNNHE
                    ***:*********:******:***:***********************:***..**

⊟Literature[edit | edit source]