PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000832000
• symbol^?: —
• synonym:
• description^?: orf2

  descriptions from strain specific annotations:

  • orf2
  • pseudogene
• strand^?: +
• coordinates^?: 1068300..1078450
• synteny block^?: BlockID0003990
• occurrence^?: in 42% of 33 strains

⊟Orthologs

COL:
SACOL0058
N315:
SA0078
NCTC8325:
SAOUHSC_00030
Newman:
NWMN_0024
USA300_FPR3757:
SAUSA300_0081
04-02981:
SA2981_0082
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
ECTR2_40
ED133:
—
ED98:
SAAV_0030
HO 5096 0412:
—
JH1:
SaurJH1_0071
JH9:
SaurJH9_0068
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
SAHV_0081
Mu50:
SAV0082
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0087
VC40:
SAVC_00125

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKINIYKSIYNFQETNTNFLENLESLNDDNYELLNDKELVSDSNELKLISKVYIRKKDKK
  N315            ----MYKSIYNFQETNTNFLENLESLNDDNYELLNDKELVSDSNELKLISKVYIRKKDKK
  NCTC8325        MKINIYKSIYNFQETNTNFLENLESLNDDNYELLNDKELVSDSNELKLISKVYIRKKDKK
  Newman          MKINIYKSIYNFQETNTNFLENLESLNDDNYELLNDKELVSDSNELKLISKVYIRKKDKK
  USA300_FPR3757  MKINIYKSIYNFQETNTNFLENLESLNDDNYELLNDKELVSDSNELKLISKVYIRKKDKK
                      :*******************************************************
  
  COL             LLDWQLLIKNVYLDTEEDDNLFSESGHHFDAILFLKEDTTLQNNVYIIPFGQAYHDINNL
  N315            LLDWQLLIKNVYLDTEEDDNLFSESGHHFDAILFLKEDTTLQNNVYIIPFGQAYHDINNL
  NCTC8325        LLDWQLLIKNVYLDTEEDDNLFSESGHHFDAILFLKEDTTLQNNVYIIPFGQAYHDINNL
  Newman          LLDWQLLIKNVYLDTEEDDNLFSESGHHFDAILFLKEDTTLQNNVYIIPFGQAYHDINNL
  USA300_FPR3757  LLDWQLLIKNVYLDTEEDDNLFSESGHHFDAILFLKEDTTLQNNVYIIPFGQAYHDINNL
                  ************************************************************
  
  COL             IDYDFGIDFAERAIKNEDIVNKNVNFFQQNRLKEIVNYRRNSVDYVRPSESYISVQGHPQ
  N315            IDYDFGIDFAERAIKNEDIVNKNVNFFQQNRLKEIVNYRRNSVDYVRPSESYISVQGHPQ
  NCTC8325        IDYDFGIDFAERAIKNEDIVNKNVNFFQQNRLKEIVNYRRNSVDYVRPSESYISVQGHPQ
  Newman          IDYDFGIDFAERAIKNEDIVNKNVNFFQQNRLKEIVNYRRNSVDYVRPSESYISVQGHPQ
  USA300_FPR3757  IDYDFGIDFAERAIKNEDIVNKNVNFFQQNRLKEIVNYRRNSVDYVRPSESYISVQGHPQ
                  ************************************************************
  
  COL             NPQIFGKTMTCGTSISLRVPNRKQQFIDKISVIIKEINAIINLPQKISEFPRIVTLKDLN
  N315            NPQIFGKTMTCGTSISLRVPNRKQQFIDKISVIIKEINAIINLPQKISEFPRIVTLKDLN
  NCTC8325        NPQIFGKTMTCGTSISLRVPNRKQQFIDKISVIIKEINAIINLPQKISEFPRIVTLKDLN
  Newman          NPQIFGKTMTCGTSISLRVPNRKQQFIDKISVIIKEINAIINLPQKISEFPRIVTLKDLN
  USA300_FPR3757  NPQIFGKTMTCGTSISLRVPNRKQQFIDKISVIIKEINAIINLPQKISEFPRIVTLKDLN
                  ************************************************************
  
  COL             KIEVLDTLLLKKLSNSSTTENISIDISRFLELSNMILLLDDMLDVN--IYINSFKNNTLE
  N315            KIEVLDTLLLKKLSNSSTTENISIDISRFLELSNMILLLDDMLDVN--IYINSFKNNTLE
  NCTC8325        KIEVLDTLLLKKLSNSSTTENISIDISRFLELSNMILLLDDMLDVN--IYINSFKNNTLE
  Newman          KIEVLDTLLLKKLSNSSTTENISIDISRFLELSNMILLLDDMLDVN--IYINSFKNNTLE
  USA300_FPR3757  KIEVLDTLLLKKLSNSSTTENISIDISRFLELSNMILLLDDMLDVNIYIYINSFKNNTLE
                  **********************************************  ************
  
  COL             TFDATDPEVDYITEIGDYLLKYDVNSINDVRIEVIDNLGHSNNMLLKTILHAEVEMEDGK
  N315            TFDATDPEVDYITEIGDYLLKYDVNSINDVRIEVIDNLGHSNNMLLKTILHAEVEMEDGK
  NCTC8325        TFDATDPEVDYITEIGDYLLKYDVNSINDVRIEVIDNLGHSNNMLLKTILHAEVEMEDGK
  Newman          TFDATDPEVDYITEIGDYLLKYDVNSINDVRIEVIDNLGHSNNMLLKTILHAEVEMEDGK
  USA300_FPR3757  TFDATDPEVDYITEIGDYLLKYDVNSINDVRIEVIDNLGHSNNMLLKTILHAEVEMEDGK
                  ************************************************************
  
  COL             KYLLQNGKWGYFNREFFDLLNDHLNEIEIRYNTLTPTGLVFKEGEEGYIKEIVGRLPEEY
  N315            KYLLQNGKWGYFNREFFDLLNDHLNEIEIRYNTLTPTGLVFKEGEEGYIKEIVGRLPEEY
  NCTC8325        KYLLQNGKWGYFNREFFDLLNDHLNEIEIRYNTLTPTGLVFKEGEEGYIKEIVGRLPEEY
  Newman          KYLLQNGKWGYFNREFFDLLNDHLNEIEIRYNTLTPTGLVFKEGEEGYIKEIVGRLPEEY
  USA300_FPR3757  KYLLQNGKWGYFNREFFDLLNDHLNEIEIRYNTLTPTGLVFKEGEEGYIKEIVGRLPEEY
                  ************************************************************
  
  COL             LMLHKKFIKPINKNFIVKGNGIELADLYNIKNKELFTIKRGINTSLSLYSLEQNIIAINA
  N315            LMLHKKFIKPINKNFIVKGNGIELADLYNIKNKELFTIKRGINTSLSLYSLEQNIIAINA
  NCTC8325        LMLHKKFIKPINKNFIVKGNGIELADLYNIKNKELFTIKRGINTSLSLYSLEQNIIAINA
  Newman          LMLHKKFIKPINKNFIVKGNGIELADLYNIKNKELFTIKRGINTSLSLYSLEQNIIAINA
  USA300_FPR3757  LMLHKKFIKPINKNFIVKGNGIELADLYNIKNKELFTIKRGINTSLSLYSLEQNIIAINA
                  ************************************************************
  
  COL             LKYPESYNFEELIEAIPDNSENIFNDIQRSTNFSIVWILPISSIDNMPIKDMVHTSNVIN
  N315            LKYPESYNFEELIEAIPDNSENIFNDIQRSTNFSIVWILPISSIDNMPIKDMVHTSNVIN
  NCTC8325        LKYPESYNFEELIEAIPDNSENIFNDIQRSTNFSIVWILPISSIDNMPIKDMVHTSNVIN
  Newman          LKYPESYNFEELIEAIPDNSENIFNDIQRSTNFSIVWILPISSIDNMPIKDMVHTSNVIN
  USA300_FPR3757  LKYPESYNFEELIEAIPDNSENIFNDIQRSTNFSIVWILPISSIDNMPIKDMVHTSNVIN
                  ************************************************************
  
  COL             KNFQLTNLGSVLLKNKLVEWSLYLKDQRINPIIYMETPTEDRN
  N315            KNFQLTNLGSVLLKNKLVEWSLYLKDQRINPIIYMETPTEDRN
  NCTC8325        KNFQLTNLGSVLLKNKLVEWSLYLKDQRINPIIYMETPTEDRN
  Newman          KNFQLTNLGSVLLKNKLVEWSLYLKDQRINPIIYMETPTEDRN
  USA300_FPR3757  KNFQLTNLGSVLLKNKLVEWSLYLKDQRINPIIYMETPTEDRN
                  *******************************************