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⊟Summary[edit | edit source]
- pan ID?: SAUPAN000946000
- symbol?: —
- synonym:
- description?: GntR family transcriptional regulator
- GntR family transcriptional regulator
- GntR family transcriptional regulator protein
- bacterial regulatory s, gntR family protein
- putative regulator for deoxynucleosideutilization, GntR family
- regulator for deoxynucleoside utilization, GntR family
- regulatory protein GntR
- regulatory proteins, gntR family protein
- transcriptional regulator, GntR family
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 1207496..1208346
- synteny block?: BlockID0004820
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0136
08BA02176:
C248_0124
11819-97:
MS7_0126
6850:
RSAU_000089
71193:
ST398NM01_0149
ECT-R 2:
ECTR2_91
ED133:
SAOV_0082
ED98:
SAAV_0103
HO 5096 0412:
SAEMRSA15_01010
JH1:
SaurJH1_0126
JH9:
SaurJH9_0121
JKD6008:
SAA6008_00113
JKD6159:
SAA6159_00118
LGA251:
SARLGA251_01090
M013:
M013TW_0125
MRSA252:
SAR0137
MSHR1132:
SAMSHR1132_01110
MSSA476:
SAS0109
Mu3:
SAHV_0134
Mu50:
SAV0135
MW2:
MW0109
RF122:
SAB0074c
ST398:
SAPIG0149
T0131:
SAT0131_00123 (xylR)
TCH60:
HMPREF0772_10363
TW20:
SATW20_01460
USA300_TCH1516:
USA300HOU_0147
VC40:
SAVC_00420
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MEVVYVTQTQPKFLTIYNTLYKEIQIGKYPSGHALPTEKELCARFDVSRMTLRQAIKLLA
N315 -----MTQTQPKFLTIYNTLYKEIQIGKYPSGHALPTEKELCARFDVSRMTLRQAIKLLA
NCTC8325 MEVVYVTQTQPKFLTIYNTLYKEIQIGKYPSGHALPTEKELCARFDVSRMTLRQAIKLLA
Newman MEVVYVTQTQPKFLTIYNTLYKEIQIGKYPSGHALPTEKELCARFDVSRMTLRQAIKLLA
USA300_FPR3757 MEVVYVTQTQPKFLTIYNTLYKEIQIGKYPSGHALPTEKELCARFDVSRMTLRQAIKLLA
:******************************************************
COL EDGIVESTRGKGHFVIPQTNAQHASSMDQFKHPLDQILLARVSMSSINYRVDLESEYTNH
N315 EDGIVESTRGKGHFVIPQTNAQHASSMDQFKHPLDQILLARVSMSSINYRVDLESEYTNH
NCTC8325 EDGIVESTRGKGHFVIPQTNAQHASSMDQFKHPLDQILLARVSMSSINYRVDLESEYTNH
Newman EDGIVESTRGKGHFVIPQTNAQHASSMDQFKHPLDQILLARVSMSSINYRVDLESEYTNH
USA300_FPR3757 EDGIVESTRGKGHFVIPQTNAQHASSMDQFKHPLDQILLARVSMSSINYRVDLESEYTNH
************************************************************
COL LFANHPSAVIAMERYYQKKDNHSKQADAFCFTFIPLNVIDTFKVNTQNEDDMKTFVEQTI
N315 LFANHPSAVIAMERYYQKKDNHSKQADAFCFTFIPLNVIDTFKVNTQNEDDMKTFVEQTI
NCTC8325 LFANHPSAVIAMERYYQKKDNHSKQADAFCFTFIPLNVIDTFKVNTQNEDDMKTFVEQTI
Newman LFANHPSAVIAMERYYQKKDNHSKQADAFCFTFIPLNVIDTFKVNTQNEDDMKTFVEQTI
USA300_FPR3757 LFANHPSAVIAMERYYQKKDNHSKQADAFCFTFIPLNVIDTFKVNTQNEDDMKTFVEQTI
************************************************************
COL YSNAYQSDLKMSITKAPHFKNHSHVFDGDTHCWLIIETLYAQTPYPIMINKWYIPQEISE
N315 YSNAYQSDLKMSITKAPRFKNHSHVFDGDTHCWLIIETLYAQTPYPIMINKWYIPQEISE
NCTC8325 YSNAYQSDLKMSITKAPHFKNHSHVFDGDTHCWLIIETLYAQTPYPIMINKWYIPQEISE
Newman YSNAYQSDLKMSITKAPHFKNHSHVFDGDTHCWLIIETLYAQTPYPIMINKWYIPQEISE
USA300_FPR3757 YSNAYQSDLKMSITKAPHFKNHSHVFDGDTHCWLIIETLYAQTPYPIMINKWYIPQEISE
*****************:******************************************
COL LTLTRIRQSDY
N315 LTLTRIRQSDY
NCTC8325 LTLTRIRQSDY
Newman LTLTRIRQSDY
USA300_FPR3757 LTLTRIRQSDY
***********