⊟Summary[edit | edit source]

pan ID^?: SAUPAN000977000
symbol^?: capD
synonym:
description^?: polysaccharide biosynthesis protein
- polysaccharide biosynthesis protein
- capsular polysaccharide biosynthesis protein Cap5D
- capsular polysaccharide synthesis enzyme CapD
- capsular polysaccharide synthesis protein Cap5D
- polysaccharide biosynthesis protein CapD
- capsular polysaccharide biosynthesis protein capD
- Capsular polysaccharide synthesis enzyme Cap8D
- capsular polysaccharide synthesis enzyme
- capsular polysaccharide synthesis enzyme Cap5D
- polysaccharide biosynthesis family protein
- pseudogene
- UDP-D-quinovosamine 4-dehydrogenase
strand^?: +
coordinates^?: 1232687..1234601
synteny block^?: BlockID0005110
occurrence^?: in 97% of 33 strains

⊟Orthologs[edit | edit source]

COL:

SACOL0139 (cap5D)

N315:

SA0147 (capD)

NCTC8325:

SAOUHSC_00117

Newman:

NWMN_0098 (capD)

USA300_FPR3757:

SAUSA300_0155 (cap5D)

04-02981:

SA2981_0153 (capD)

08BA02176:

C248_0141 (capD)

11819-97:

MS7_0146

6850:

RSAU_000106 (capD)

71193:

ST398NM01_0166

ECT-R 2:

ECTR2_109

ED133:

SAOV_0099

ED98:

SAAV_0120 (cap5D)

HO 5096 0412:

SAEMRSA15_01180 (capD)

JH1:

SaurJH1_0143

JH9:

SaurJH9_0138

JKD6008:

SAA6008_00130 (cap5D)

JKD6159:

SAA6159_00136 (cap5D)

LGA251:

SARLGA251_01260 (capD)

M013:

M013TW_0142

MRSA252:

SAR0154 (capD)

MSHR1132:

SAMSHR1132_01260

MSSA476:

SAS0127

Mu3:

SAHV_0151 (capD)

Mu50:

SAV0152 (capD)

MW2:

MW0127 (cap8D)

RF122:

SAB0093 (capD)

ST398:

SAPIG0166

T0131:

SAT0131_00142

TCH60:

HMPREF0772_10346 (capD)

TW20:

SATW20_01630 (capD)

USA300_TCH1516:

—

VC40:

SAVC_00530

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

alignment of orthologues:
CLUSTAL format alignment by MAFFT L-INS-i (v7.307)

COL             ----MAHLSVKLRLLILALIDSLIVTFSVFVSYYILEPYFKTYSVKLLILAAISLFISHH
N315            ----MAHLSVKLRLLILALIDSLIVTFSVFVSYYILEPYFKTYSVKLLILAAISLFISHH
NCTC8325        ----MAHLSVKLRLLILALIDSLIVTFSVFVSYYILEPYFKTYSVKLLILAAISLFISHH
Newman          MRGFMAHLSVKLRLLILALIDSLIVTFSVFVSYYILEPYFKTYSVKLLILAAISLFISHH
                    ********************************************************

COL             ISAFIFNMYHRAWEYASVSELILIVKAVTTSIVITMVVVTIVTGNRPFFRLYLITWMMHL
N315            ISAFIFNMYHRAWEYASVSELILIVKAVTTSIVITMVVVTIVTGNRPFFRLYLITWMMHL
NCTC8325        ISAFIFNMYHRAWEYASVSELILIVKAVTTSIVITMVVVTIVTGNRPFFRLYLITWMMHL
Newman          ISAFIFNMYHRAWEYASVSELILIVKAVTTSIVITMVVVTIVTGNRPFFRLYLITWMMHL
                ************************************************************

COL             ILIGGSRLFWRIYRKYLGGKSFNKKPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDD
N315            ILIGGSRLFWRIYRKYLGGKSFNKKPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDD
NCTC8325        ILIGGSRLFWRIYRKYLGGKSFNKKPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDD
Newman          ILIGGSRLFWRIYRKYLGGKSFNKKPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDD
                ************************************************************

COL             EHKRNITITEGVKVQGKIADIPELVRKYKIKKIIIAIPTIGQERLKEINNICHMDGVELL
N315            EHKRNITITEGVKVQGKIADIPELVRKYKIKKIIIAIPTIGQERLKEINNICHMDGVELL
NCTC8325        EHKRNITITEGVKVQGKIADIPELVRKYKIKKIIIAIPTIGQERLKEINNICHMDGVELL
Newman          EHKRNITITEGVKVQGKIADIPELVRKYKIKKIIIAIPTIGQERLKEINNICHMDGVELL
                ************************************************************

COL             KMPNIEDVMSGELEVNQLKKVEVEDLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSE
N315            KMPNIEDVMSGELEVNQLKKVEVEDLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSE
NCTC8325        KMPNIEDVMSGELEVNQLKKVEVEDLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSE
Newman          KMPNIEDVMSGELEVNQLKKVEVEDLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSE
                ************************************************************

COL             ICRQVCNFYPERIILLGHGENSIYLINRELRNRFGKNVDIVPIIADVQNRARMFEIMETY
N315            ICRQVCNFYPERIILLGHGENSIYLINRELRNRFGKNVDIVPIIADVQNRARMFEIMETY
NCTC8325        ICRQVCNFYPERIILLGHGENSIYLINRELRNRFGKNVDIVPIIADVQNRARMFEIMETY
Newman          ICRQVCNFYPERIILLGHGENSIYLINRELRNRFGKNVDIVPIIADVQNRARMFEIMETY
                ************************************************************

COL             KPYAVYHAAAHKHVPLMEDNPEEAVRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPN
N315            KPYAVYHAAAHKHVPLMEDNPEEAVHNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPN
NCTC8325        KPYAVYHAAAHKHVPLMEDNPEEAVRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPN
Newman          KPYAVYHAAAHKHVPLMEDNPEEAVRNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPN
                *************************:**********************************

COL             VMGASKRIAEMIIQSLNDETHRTNFVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPE
N315            VMGASKRIAEMIIQSLNDETHRTNFVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPE
NCTC8325        VMGASKRIAEMIIQSLNDETHRTNFVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPE
Newman          VMGASKRIAEMIIQSLNDETHRTNFVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPE
                ************************************************************

COL             MTRYFMTIPEASRLVLQAGALAEGGEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITY
N315            MTRYFMTIPEASRLVLQAGALAEGGEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITY
NCTC8325        MTRYFMTIPEASRLVLQAGALAEGGEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITY
Newman          MTRYFMTIPEASRLVLQAGALAEGGEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITY
                ************************************************************

COL             TGIRPGEKMFEELMNKDEVHPEQVFEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINY
N315            TGIRPGEKMFEELMNKDEVHPEQVFEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINY
NCTC8325        TGIRPGEKMFEELMNKDEVHPEQVFEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINY
Newman          TGIRPGEKMFEELMNKDEVHPEQVFEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINY
                ************************************************************

COL             ANGKKGDNYVR
N315            ANGKKGDNYVR
NCTC8325        ANGKKGDNYVR
Newman          ANGKKGDNYVR
                ***********

Navigation menu

Contents

⊟Summary[edit | edit source]

⊟Orthologs[edit | edit source]

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Search

Navigation menu

⊟Summary[edit | edit source]

⊟Orthologs[edit | edit source]

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]