PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001056000
• symbol^?: —
• synonym:
• description^?: ABC transporter ATP-binding protein

  descriptions from strain specific annotations:

  • ABC transporter ATP-binding protein
  • peptide ABC transporter ATP-binding protein
  • oligopeptide ABC transporter, ATP-binding protein, putative
  • oligopeptide ABC transporter ATP-binding protein
  • oligopeptide transport ATP-binding protein
  • glutathione import ATP-binding protein gsiA
  • Putative glutathione transporter, ATP-binding component
  • ABC transporter
  • nickel import ATP-binding protein NikE
  • oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein
  • pseudogene
• strand^?: -
• coordinates^?: 1329983..1331575
• synteny block^?: BlockID0005780
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0184
N315:
SA0198 (oppF)
NCTC8325:
SAOUHSC_00167
Newman:
NWMN_0143
USA300_FPR3757:
SAUSA300_0200
04-02981:
SA2981_0206 (oppF)
08BA02176:
C248_0190
11819-97:
MS7_0191 (nikE)
6850:
RSAU_000149
71193:
ST398NM01_0215
ECT-R 2:
ECTR2_166
ED133:
SAOV_0144
ED98:
SAAV_0171
HO 5096 0412:
SAEMRSA15_01640
JH1:
SaurJH1_0196
JH9:
SaurJH9_0190
JKD6008:
SAA6008_00175
JKD6159:
SAA6159_00180
LGA251:
SARLGA251_01700
M013:
M013TW_0185
MRSA252:
SAR0198
MSHR1132:
SAMSHR1132_01710
MSSA476:
SAS0181
Mu3:
SAHV_0204 (oppF)
Mu50:
SAV0205 (oppF)
MW2:
MW0181 (oppF)
RF122:
SAB0144c
ST398:
SAPIG0215
T0131:
SAT0131_00191
TCH60:
HMPREF0772_10301 (oppF)
TW20:
SATW20_02070
USA300_TCH1516:
USA300HOU_0212
VC40:
SAVC_00765

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MSNLLEVNSLNVQFNYDETTVQAVKNVSFELRKKHILGIVGESGSGKSITAKSILGLLPD
  N315            MSNLLEVNSLNVQFNYDETTVQAVKNVSFELRKKHILGIVGESGSGKSITAKSILGLLPD
  NCTC8325        MSNLLEVNSLNVQFNYDETTVQAVKNVSFELRKKHILGIVGESGSGKSITAKSILGLLPD
  Newman          MSNLLEVNSLNVQFNYDETTVQAVKNVSFELRKKHILGIVGESGSGKSITAKSILGLLPD
  USA300_FPR3757  MSNLLEVNSLNVQFNYDETTVQAVKNVSFELRKKHILGIVGESGSGKSITAKSILGLLPD
                  ************************************************************
  
  COL             YPDHTLTGEIIFNGQSLNNLSTSALQQIRGKDISMIFQDPLSSLNPRLTIGKQITEVIFQ
  N315            YPDHTLTGEIIFNGQSLNNLSTSALQQIRGKDISMIFQDPLSSLNPRLTIGKQITEVLFQ
  NCTC8325        YPDHTLTGEIIFNGQSLNNLSTSALQQIRGKDISMIFQDPLSSLNPRLTIGKQITEVIFQ
  Newman          YPDHTLTGEIIFNGQSLNNLSTSALQQIRGKDISMIFQDPLSSLNPRLTIGKQITEVIFQ
  USA300_FPR3757  YPDHTLTGEIIFNGQSLNNLSTSALQQIRGKDISMIFQDPLSSLNPRLTIGKQITEVIFQ
                  *********************************************************:**
  
  COL             HKRVSKSEAKSMTIDILEKVGIKHATRQFDAYPHELSGGMRQRVMIAMALILKPQILIAD
  N315            HKRVSKSEAKSMTINILEKVGIKHATRQFDAYPHELSGGMRQRVMIAMALILKPQILIAD
  NCTC8325        HKRVSKSEAKSMTIDILEKVGIKHATRQFDAYPHELSGGMRQRVMIAMALILKPQILIAD
  Newman          HKRVSKSEAKSMTIDILEKVGIKHATRQFDAYPHELSGGMRQRVMIAMALILKPQILIAD
  USA300_FPR3757  HKRVSKSEAKSMTIDILEKVGIKHATRQFDAYPHELSGGMRQRVMIAMALILKPQILIAD
                  **************:*********************************************
  
  COL             EPTTALDASTQNQLLQLMKSLYEYTETSIIFITHDLGAVYQFCDDVIVMKDGSVVESGTV
  N315            EPTTALDASTQNQLLQLMKSLYEYTETSIIFITHDLGAVYQFCDDVIVMKDGSVVESGTV
  NCTC8325        EPTTALDASTQNQLLQLMKSLYEYTETSIIFITHDLGAVYQFCDDVIVMKDGSVVESGTV
  Newman          EPTTALDASTQNQLLQLMKSLYEYTETSIIFITHDLGAVYQFCDDVIVMKDGSVVESGTV
  USA300_FPR3757  EPTTALDASTQNQLLQLMKSLYEYTETSIIFITHDLGAVYQFCDDVIVMKDGSVVESGTV
                  ************************************************************
  
  COL             ESIFKSPQHTYTKRLIDAIPDIHQTRPPRPLNNDILLKFDRVSVDYTSPSGSLYRAVNDI
  N315            ESIFKSPQHTYTKRLIDAIPDIHQTRPPRPLNNDILLKFDRVSVDYTSPSGSLYRAVNDI
  NCTC8325        ESIFKSPQHTYTKRLIDAIPDIHQTRPPRPLNNDILLKFDRVSVDYTSPSGSLYRAVNDI
  Newman          ESIFKSPQHTYTKRLIDAIPDIHQTRPPRPLNNDILLKFDRVSVDYTSPSGSLYRAVNDI
  USA300_FPR3757  ESIFKSPQHTYTKRLIDAIPDIHQTRPPRPLNNDILLKFDRVSVDYTSPSGSLYRAVNDI
                  ************************************************************
  
  COL             NLAIRKGETLGIVGESGSGKSTLAKTVVGLKEVSEGFIWYNELPLSLFKDDELKSLRQEI
  N315            NLAIRKGETLGIVGESGSGKSTLAKTVVGLKEVSEGFIWYNELPLSLFKDDELKSLRQEI
  NCTC8325        NLAIRKGETLGIVGESGSGKSTLAKTVVGLKEVSEGFIWYNELPLSLFKDDELKSLRQEI
  Newman          NLAIRKGETLGIVGESGSGKSTLAKTVVGLKEVSEGFIWYNELPLSLFKDDELKSLRQEI
  USA300_FPR3757  NLAIRKGETLGIVGESGSGKSTLAKTVVGLKEVSEGFIWYNELPLSLFKDDELKSLRQEI
                  ************************************************************
  
  COL             QMIFQDPFASINPRFKVIDVIKRPLIIHGKVKDNDDIIKTVVSLLEKVGLDQTFLYRYPH
  N315            QMIFQDPFASINPRFKVIDVIKRPLIIHGKVKDNDDIIKTVVSLLEKVGLDQSFLYRYPH
  NCTC8325        QMIFQDPFASINPRFKVIDVIKRPLIIHGKVKDNDDIIKTVVSLLEKVGLDQTFLYRYPH
  Newman          QMIFQDPFASINPRFKVIDVIKRPLIIHGKVKDNDDIIKTVVSLLEKVGLDQTFLYRYPH
  USA300_FPR3757  QMIFQDPFASINPRFKVIDVIKRPLIIHGKVKDNDDIIKTVVSLLEKVGLDQTFLYRYPH
                  ****************************************************:*******
  
  COL             ELSGGQRQRVSIARALAVEPKVIVCDEAVSALDVSIQKDIIELLKQLQLDFGITYLFITH
  N315            ELSGGQRQRVSIARALAVEPKVIVCDEAVSALDVSIQKDIIELLKQLQLDFGITYLFITH
  NCTC8325        ELSGGQRQRVSIARALAVEPKVIVCDEAVSALDVSIQKDIIELLKQLQLDFGITYLFITH
  Newman          ELSGGQRQRVSIARALAVEPKVIVCDEAVSALDVSIQKDIIELLKQLQLDFGITYLFITH
  USA300_FPR3757  ELSGGQRQRVSIARALAVEPKVIVCDEAVSALDVSIQKDIIELLKQLQLDFGITYLFITH
                  ************************************************************
  
  COL             DMGVINEICDRVAVMKNGEIVELNNTEDIIKHPQSDYAKQLISEVAVIAK
  N315            DMGVINEICDRVAVMKNGEIVELNNTEDIIKHPQSDYAKQLISEVAVIAK
  NCTC8325        DMGVINEICDRVAVMKNGEIVELNNTEDIIKHPQSDYAKQLISEVAVIAK
  Newman          DMGVINEICDRVAVMKNGEIVELNNTEDIIKHPQSDYAKQLISEVAVIAK
  USA300_FPR3757  DMGVINEICDRVAVMKNGEIVELNNTEDIIKHPQSDYAKQLISEVAVIAK
                  **************************************************