⊟Summary[edit | edit source]

pan ID^?: SAUPAN001093000
symbol^?: fadB
synonym:
description^?: 3-hydroxyacyl-CoA dehydrogenase
- 3-hydroxyacyl-CoA dehydrogenase
- 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein
- 3-hydroxyacyl-CoA dehydrogenase FadB, putative
- 3-hydroxyacyl-CoA dehydrogenase FadB-like protein
- 3-hydroxyacyl-CoA dehydrogenase, NAD-binding
- 3-hydroxyacyl-CoA dehydrogenase NAD-binding
- 3-hydroxyacyl-CoA dehydrogenase protein
- Enoyl-CoA hydratase / Enoyl-CoA hydratase /3-hydroxyacyl-CoA dehydrogenase
- Enoyl-CoA hydratase / Enoyl-CoA hydratase [valine degradation] / 3-hydroxyacyl-CoA dehydrogenase
- enoyl-CoA hydratase/isomerase family protein
- fatty oxidation complex protein
- putative fatty oxidation complex protein
strand^?: -
coordinates^?: 1368219..1370480
synteny block^?: BlockID0006150
occurrence^?: in 100% of 33 strains

⊟Orthologs[edit | edit source]

COL:

SACOL0212

N315:

SA0224

NCTC8325:

SAOUHSC_00196

Newman:

NWMN_0168 (fadB)

USA300_FPR3757:

SAUSA300_0226

04-02981:

SA2981_0232

08BA02176:

C248_0216 (fadB)

11819-97:

MS7_0218

6850:

RSAU_000177 (fadB)

71193:

ST398NM01_0242

ECT-R 2:

ECTR2_192

ED133:

SAOV_0169

ED98:

SAAV_0197

HO 5096 0412:

SAEMRSA15_01900 (fadB)

JH1:

SaurJH1_0222

JH9:

SaurJH9_0216

JKD6008:

SAA6008_00201 (fadB)

JKD6159:

SAA6159_00206 (fadB)

LGA251:

SARLGA251_01960 (fadB)

M013:

M013TW_0211

MRSA252:

SAR0224 (fadB)

MSHR1132:

SAMSHR1132_01970

MSSA476:

SAS0208

Mu3:

SAHV_0231

Mu50:

SAV0232

MW2:

MW0208

RF122:

SAB0171c

ST398:

SAPIG0242

T0131:

SAT0131_00219

TCH60:

HMPREF0772_10273 (fadB)

TW20:

SATW20_02330 (fadB)

USA300_TCH1516:

USA300HOU_0241

VC40:

SAVC_00900

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

alignment of orthologues:
CLUSTAL format alignment by MAFFT L-INS-i (v7.307)

COL             MTINKVTVLGAGTMGAQLAALFVNAGLKVKLLDIVVDKNDPNLIAKKSYDKITDKKRPLL
N315            MTINKVTVLGAGTMGAQLAALFVNAGLKVKLLDIVVDKNDPNLIAKKSYDKITDKKRPLL
NCTC8325        MTINKVTVLGAGTMGAQLAALFVNAGLKVKLLDIVVDKNDPNLIAKKSYDKITDKKRPLL
Newman          MTINKVTVLGAGTMGAQLAALFVNAGLKVKLLDIVVDKNDPNLIAKKSYDKITDKKRPLL
USA300_FPR3757  MTINKVTVLGAGTMGAQLAALFVNAGLKVKLLDIVVDKNDPNLIAKKSYDKITDKKRPLL
                ************************************************************

COL             FDLNLASHLTYGNFDDDLVNDDADLYIEAVKEDIEIKHAVWQQVLQHAKEDALFATNTSG
N315            FDLNLVSHLTYGNFDDDLVNDDADLYIEAVKEDIEIKHAVWQQVLQHAKEDALFATNTSG
NCTC8325        FDLNLASHLTYGNFDDDLVNDDADLYIEAVKEDIEIKHAVWQQVLQHAKEDALFATNTSG
Newman          FDLNLASHLTYGNFDDDLVNDDADLYIEAVKEDIEIKHAVWQQVLQHAKEDALFATNTSG
USA300_FPR3757  FDLNLASHLTYGNFDDDLVNDDADLYIEAVKEDIEIKHAVWQQVLQHAKEDALFATNTSG
                *****.******************************************************

COL             IPINAIAQAFNEKDQERFFGLHFFNPPRIMKLVELIPTSHTKESIILDVKNFAQNVLGKG
N315            IPINAIAQAFNEKDQERFFGLHFFNPPRIMKLVELIPTSHTKESIILDVKNFAQNVLGKG
NCTC8325        IPINAIAQAFNEKDQERFFGLHFFNPPRIMKLVELIPTSHTKESIILDVKNFAQNVLGKG
Newman          IPINAIAQAFNEKDQERFFGLHFFNPPRIMKLVELIPTSHTKESIILDVKNFAQNVLGKG
USA300_FPR3757  IPINAIAQAFNEKDQERFFGLHFFNPPRIMKLVELIPTSHTKESIILDVKNFAQNVLGKG
                ************************************************************

COL             VIVVNDVPGFVANRVGTQTMNDIMYRAEQHKISIVDVDALTGQAIGRPKTGTYALSDLVG
N315            VIVVNDVPGFVANRVGTQTMNDIMYRAEQHKLSIVDVDALTGQAIGRPKTGTYALSDLVG
NCTC8325        VIVVNDVPGFVANRVGTQTMNDIMYRAEQHKISIVDVDALTGQAIGRPKTGTYALSDLVG
Newman          VIVVNDVPGFVANRVGTQTMNDIMYRAEQHKISIVDVDALTGQAIGRPKTGTYALSDLVG
USA300_FPR3757  VIVVNDVPGFVANRVGTQTMNDIMYRAEQHKISIVDVDALTGQAIGRPKTGTYALSDLVG
                *******************************:****************************

COL             LDIAVSVIKGMQQVPEETPYFHDVKIVNTLFDNGALGRKTKQGFYKKDKETKARLVYDVE
N315            LDIAVSVIKGMQQVPEETPYFHDVKIVNTLFDNGALGRKTKQGFYKKDKETKARLVYDVE
NCTC8325        LDIAVSVIKGMQQVPEETPYFHDVKIVNTLFDNGALGRKTKQGFYKKDKETKARLVYDVE
Newman          LDIAVSVIKGMQQVPEETPYFHDVKIVNTLFDNGALGRKTKQGFYKKDKETKARLVYDVE
USA300_FPR3757  LDIAVSVIKGMQQVPEETPYFHDVKIVNTLFDNGALGRKTKQGFYKKDKETKARLVYDVE
                ************************************************************

COL             KQDYVPVSQPQLPILNEFNKDLVHNLDTIFNAQDEAGLFLWETLRNNFYYSAINVPKATD
N315            KQDYVPVSQPQLPILNEFNKDLVHNLDVIFNAQDEAGLFLWETLRNNFYYSAINVPKATD
NCTC8325        KQDYVPVSQPQLPILNEFNKDLVHNLDTIFNAQDEAGLFLWETLRNNFYYSAINVPKATD
Newman          KQDYVPVSQPQLPILNEFNKDLVHNLDTIFNAQDEAGLFLWETLRNNFYYSAINVPKATD
USA300_FPR3757  KQDYVPVSQPQLPILNEFNKDLVHNLDTIFNAQDEAGLFLWETLRNNFYYSAINVPKATD
                ***************************.********************************

COL             DFRDIDRALVWGFNWKLGPFQLWDAMGYERVKTRMEDELGDLPQWISDLDGGFYKQDETI
N315            DFRDIDRALVWGFNWKLGPFQLWDAMGYERVKTRMEDELGDLPQWISDLDGGFYKQDETI
NCTC8325        DFRDIDRALVWGFNWKLGPFQLWDAMGYERVKTRMEDELGDLPQWISDLDGGFYKQDETI
Newman          DFRDIDRALVWGFNWKLGPFQLWDAMGYERVKTRMEDELGDLPQWISDLDGGFYKQDETI
USA300_FPR3757  DFRDIDRALVWGFNWKLGPFQLWDAMGYERVKTRMEDELGDLPQWISDLDGGFYKQDETI
                ************************************************************

COL             EYATPISHFVKDELWDKGDAKLSVTHDDQLLLKLQSKNNVITDEFNDALVDAIDLLENDH
N315            EYATPVSHFVKDELWDKGDAKLSVTHDDQLLLKLQSKNNVITDEFNDALVDAIDLLENDH
NCTC8325        EYATPISHFVKDELWDKGDAKLSVTHDDQLLLKLQSKNNVITDEFNDALVDAIDLLENDH
Newman          EYATPISHFVKDELWDKGDAKLSVTHDDQLLLKLQSKNNVITDEFNDALVDAIDLLENDH
USA300_FPR3757  EYATPISHFVKDELWDKGDAKLSVTHDDQLLLKLQSKNNVITDEFNDALVDAIDLLENDH
                *****:******************************************************

COL             YTSMVIYADGNNFSVGANLFLMKKAHEDGLVDDVVAQSIDKLHYSFNRLKYSLKPVVTAV
N315            YTSMVIYADGNNFSVGANLFLMKKAHEDGLVDDVVAQSIDKLHYSFNRLKYSLKPVVTAV
NCTC8325        YTSMVIYADGNNFSVGANLFLMKKAHEDGLVDDVVAQSIDKLHYSFNRLKYSLKPVVTAV
Newman          YTSMVIYADGNNFSVGANLFLMKKAHEDGLVDDVVAQSIDKLHYSFNRLKYSLKPVVTAV
USA300_FPR3757  YTSMVIYADGNNFSVGANLFLMKKAHEDGLVDDVVAQSIDKLHYSFNRLKYSLKPVVTAV
                ************************************************************

COL             QGRALGGGCELVLYSPIVVAASETYIGLVEAGVGLLPSGGGLAEMADRILRTSHKFDDKQ
N315            QGRALGGGCELVLYSPIVVAASETYIGLVEAGVGLLPSGGGLAEMADRILRTSHKFDDKQ
NCTC8325        QGRALGGGCELVLYSPIVVAASETYIGLVEAGVGLLPSGGGLAEMADRILRTSHKFDDKQ
Newman          QGRALGGGCELVLYSPIVVAASETYIGLVEAGVGLLPSGGGLAEMADRILRTSHKFDDKQ
USA300_FPR3757  QGRALGGGCELVLYSPIVVAASETYIGLVEAGVGLLPSGGGLAEMADRILRTSHKFDDKQ
                ************************************************************

COL             ASMTKVLTNIAFAKVSTNAFEARRYGYLRDTDTIIFNTAQRVEVALKRAKYEAETNYIPN
N315            ASMTKVLTNIAFAKVSTNAFEARRYGYLRDTDTIIFNTAQRVEVALKRAKYEAETNYIPN
NCTC8325        ASMTKVLTNIAFAKVSTNAFEARRYGYLRDTDTIIFNTAQRVEVALKRAKYEAETNYIPN
Newman          ASMTKVLTNIAFAKVSTNAFEARRYGYLRDTDTIIFNTAQRVEVALKRAKYEAETNYIPN
USA300_FPR3757  TSMTKVLTNIAFAKVSTNAFEARRYGYLRDTDTIIFNTAQRVEVALKRAKYEAETNYIPN
                :***********************************************************

COL             PRHQYIALGEDFKALIQGQLDAQRRGHFISDHDYHIALNIATILAGGDLPRNTFINQRYI
N315            PRHQYIALGEDFKALIQGQLDAQRRGHFISDHDYHIALNIATILAGGDLPRNTFINQRYI
NCTC8325        PRHQYIALGEDFKALIQGQLDAQRRGHFISDHDYHIALNIATILAGGDLPRNTFINQRYI
Newman          PRHQYIALGEDFKALIQGQLDAQRRGHFISDHDYHIALNIATILAGGDLPRNTFINQRYI
USA300_FPR3757  PRHQYIALGEDFKALIQGQLDAQRRGHFISDHDYHIALNIATILAGGDLPRNTFINQRYI
                ************************************************************

COL             QSLEKIGFIDLLKSKKSYERIAHMLKTGKPLRN
N315            QSLEKIGFIDLLKSKKSYERIAHMLKTGKPLRN
NCTC8325        QSLEKIGFIDLLKSKKSYERIAHMLKTGKPLRN
Newman          QSLEKIGFIDLLKSKKSYERIAHMLKTGKPLRN
USA300_FPR3757  QSLEKIGFIDLLKSKKSYERIAHMLKTGKPLRN
                *********************************

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Contents

⊟Summary[edit | edit source]

⊟Orthologs[edit | edit source]

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

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⊟Summary[edit | edit source]

⊟Orthologs[edit | edit source]

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]