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⊟Summary[edit | edit source]
- pan ID?: SAUPAN001102000
- symbol?: nikA
- synonym: opp5A
- description?: ABC transporter substrate-binding protein
- ABC transporter substrate-binding protein
- nickel ABC transporter substrate-binding protein
- nickel ABC transporter, substrate-binding protein
- putative extracellular solute-bindinglipoprotein
- ABC superfamily ATP binding cassette transporter, binding protein
- ABC transporter, substrate-binding protein
- ABC transporter ATP-binding protein
- bacterial extracellular solute-binding s, 5 Middle family protein
- dipeptide-binding protein
- extracellular solute-binding lipoprotein
- extracellular solute-binding protein
- extracellular solute-binding proteins, family 5 Middle family protein
- nickel ABC transporter nickel-binding protein
- Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein oppA
- oligopeptide ABC transporter substrate-binding protein OppA
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 1380694..1382117
- synteny block?: BlockID0006220
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0237
08BA02176:
C248_0222
11819-97:
MS7_0223
6850:
RSAU_000182
71193:
ST398NM01_0248
ECT-R 2:
ECTR2_197
ED133:
SAOV_0174
ED98:
SAAV_0202
HO 5096 0412:
SAEMRSA15_01960
JH1:
SaurJH1_0227
JH9:
SaurJH9_0221
JKD6008:
SAA6008_00207
JKD6159:
SAA6159_00214
LGA251:
SARLGA251_02010
M013:
M013TW_0216
MRSA252:
SAR0230
MSHR1132:
SAMSHR1132_02060
MSSA476:
SAS0213
Mu3:
SAHV_0236
Mu50:
SAV0237
MW2:
MW0213
RF122:
SAB0176c
ST398:
SAPIG0248
T0131:
SAT0131_00227
TCH60:
HMPREF0772_10267
TW20:
SATW20_02390
USA300_TCH1516:
USA300HOU_0246
VC40:
SAVC_00925
⊟Genome Viewer[edit | edit source]
COL | |
N315 | |
NCTC8325 | |
Newman | |
USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKFKRLATIFSAVLVLSGCGSMHSSGKDLNISLPLKTKSIAPYETDVPVKIGAAESLFKT
N315 MKFKRLATIFSAVLVLSGCGSMHSSGKDLNISLPLKTKSIAPYETDVPVKIGAAESLFKT
NCTC8325 ---------------------MHSSGKDLNISLPLKTKSIAPYETDVPVKIGAAESLFKT
Newman MKFKRLATIFSAVLVLSGCGSMHSSGKDLNISLPLKTKSIAPYETDVPVKIGAAESLFKT
USA300_FPR3757 MKFKRLATIFSAVLVLSGCGSMHSSGKDLNISLPLKTKSIAPYETDVPVKIGAAESLFKT
***************************************
COL NDQGKIEKALVKSYHQPNDTTLDIELKDNIKFQNGQKLTAEKVKSSLENSMKKSDLVKYS
N315 NDQGKIEKALVKSYHQPNDTTLDIELKDNIKFQNGQKLTAEKVKSSLENSMKKSDLVKYS
NCTC8325 NDQGKIEKALVKSYHQPNDTTLDIELKDNIKFQNGQKLTAEKVKSSLENSMKKSDLVKYS
Newman NDQGKIEKALVKSYHQPNDTTLDIELKDNIKFQNGQKLTAEKVKSSLENSMKKSDLVKYS
USA300_FPR3757 NDQGKIEKALVKSYHQPNDTTLDIELKDNIKFQNGQKLTAEKVKSSLENSMKKSDLVKYS
************************************************************
COL LPISSITAKGQKLTIKTNSAYPELVSELANPFMAIYDTDAKSDVNQTPVGTGPYQIKDYK
N315 LPISSITAKGQKLTIKTNSAYPELVSELANPFMAIYYTDAKSDVNQTPVGTGPYQIKDYK
NCTC8325 LPISSITAKGQKLTIKTNSAYPELVSELANPFMAIYDTDAKSDVNQTPVGTGPYQIKDYK
Newman LPISSITAKGQKLTIKTNSAYPELVSELANPFMAIYDTDAKSDVNQTPVGTGPYQIKDYK
USA300_FPR3757 LPISSITAKGQKLTIKTNSAYPELVSELANPFMAIYDTDAKSDVNQTPVGTGPYQIKDYK
************************************ ***********************
COL QSRKISLSNFKDYWQGKPKLDHITVTYQEDGNNRVRNLESQKDDLITDVPVNKVQDIENN
N315 QSRKISLSNFKDYWQGKPKLDHITVTYQEDGNNRVRNLESQKDDLITDVPVNKVHDIENN
NCTC8325 QSRKISLSNFKDYWQGKPKLDHITVTYQEDGNNRVRNLESQKDDLITDVPVNKVQDIENN
Newman QSRKISLSNFKDYWQGKPKLDHITVTYQEDGNNRVRNLESQKDDLITDVPVNKVQDIENN
USA300_FPR3757 QSRKISLSNFKDYWQGKPKLDHITVTYQEDGNNRVRNLESQKDDLITDVPVNKVQDIENN
******************************************************:*****
COL QNLKVSKESGFRTSLLMYNHTNKKMTKSVREALDHIIDRQGIADHIYQGYAKPATSPFND
N315 QNLKVSKESGFRTSLLMYNHTNKKMTKSVREALDHIIDRQGIADHIYQGYAKPATSPFND
NCTC8325 QNLKVSKESGFRTSLLMYNHTNKKMTKSVREALDHIIDRQGIADHIYQGYAKPATSPFND
Newman QNLKVSKESGFRTSLLMYNHTNKKMTKSVREALDHIIDRQGIADHIYQGYAKPATSPFND
USA300_FPR3757 QNLKVSKESGFRTSLLMYNHTNKKMTKSVREALDHIIDRQGIADHIYQGYAKPATSPFND
************************************************************
COL KIPYIKEPKLTKQNIEQAKMLLAKDGYTKEHPLKIKLITYDGRPELSKIAQVLQSDAKKA
N315 KIPYIKEPKLTKQNIEQAKTLLAKDGYTKEHPLKIKLITYDGRPELSKIAQVLQSDAKKA
NCTC8325 KIPYIKEPKLTKQNIEQAKMLLAKDGYTKEHPLKIKLITYDGRPELSKIAQVLQSDAKKA
Newman KIPYIKEPKLTKQNIEQAKMLLAKDGYTKEHPLKIKLITYDGRPELSKIAQVLQSDAKKA
USA300_FPR3757 KIPYIKEPKLTKQNIEQAKMLLAKDGYTKEHPLKIKLITYDGRPELSKIAQVLQSDAKKA
******************* ****************************************
COL NIEIDIKSVDDIEGYLKDRSAWDATMYSFGTIPRGDTGYFFNQAYKKDGAINKGDYNNSN
N315 NIEIDIKSVDDIEGYLKDRSAWDATMYSFGTIPRGDTGYFFNQAYKKDGAINKGDYNNSN
NCTC8325 NIEIDIKSVDDIEGYLKDRSAWDATMYSFGTIPRGDTGYFFNQAYKKDGAINKGDYNNSN
Newman NIEIDIKSVDDIEGYLKDRSAWDATMYSFGTIPRGDTGYFFNQAYKKDGAINKGDYNNSN
USA300_FPR3757 NIEIDIKSVDDIEGYLKDRSAWDATMYSFGTIPRGDTGYFFNQAYKKDGAINKGDYNNSN
************************************************************
COL VDDLINQLNHTVDVKERHNISNDIIKLSSRDVPNSYIAYNDQIVAANSKVKNYKVTPEGI
N315 VDDLINQLNHTVDVKERHNISNDIIKLSSRDVPNSYIAYNDQIVAANSKVKNYKVTPEGI
NCTC8325 VDDLINQLNHTVDVKERHNISNDIIKLSSRDVPNSYIAYNDQIVAANSKVKNYKVTPEGI
Newman VDDLINQLNHTVDVKERHNISNDIIKLSSRDVPNSYIAYNDQIVAANSKVKNYKVTPEGI
USA300_FPR3757 VDDLINQLNHTVDVKERHNISNDIIKLSSRDVPNSYIAYNDQIVAANSKVKNYKVTPEGI
************************************************************
COL YLIDYRTTIER
N315 YLIDYRTTIER
NCTC8325 YLIDYRTTIER
Newman YLIDYRTTIER
USA300_FPR3757 YLIDYRTTIER
***********