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⊟Summary[edit | edit source]
- pan ID?: SAUPAN001140000
- symbol?: lytR
- synonym:
- description?: DNA-binding response regulator
- DNA-binding response regulator
- two-component response regulator
- two-component response regulator LytR, putative
- sensory transduction protein lytR
- sensory transduction protein lytT
- autolysin response regulator protein
- Autolysis response regulater LytR
- response regulator LytR
- two component transcriptional regulator, LytR
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1411800..1412540
- synteny block?: BlockID0006600
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0261 (lytR)
08BA02176:
C248_0249 (lytR)
11819-97:
MS7_0251
6850:
RSAU_000208 (lytR)
71193:
ST398NM01_0274
ECT-R 2:
ECTR2_222
ED133:
SAOV_0201
ED98:
SAAV_0229 (lytR)
HO 5096 0412:
SAEMRSA15_02200 (lytR)
JH1:
SaurJH1_0252
JH9:
SaurJH9_0246
JKD6008:
SAA6008_00235 (lytR)
JKD6159:
SAA6159_00238 (lytR)
LGA251:
SARLGA251_02250 (lytR)
M013:
M013TW_0242
MRSA252:
SAR0258 (lytR)
MSHR1132:
SAMSHR1132_02280
MSSA476:
SAS0238
Mu3:
SAHV_0260 (lytR)
Mu50:
SAV0261 (lytR)
MW2:
MW0237 (lytR)
RF122:
SAB0200 (lytR)
ST398:
SAPIG0274
T0131:
SAT0131_00254
TCH60:
HMPREF0772_10241 (lytR)
TW20:
SATW20_02630 (lytR)
USA300_TCH1516:
USA300HOU_0272 (lytR)
VC40:
SAVC_01045
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKALIIDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQYDIIFLDVNLMDEN
N315 MKALIIDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQYDIIFLDVNLMDEN
NCTC8325 MKALIIDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQYDIIFLDVNLMDEN
Newman MKALIIDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQYDIIFLDVNLMDEN
USA300_FPR3757 MKALIIDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQYDIIFLDVNLMDEN
************************************************************
COL GIELGAKIQKMKEPPAIIFATAHDQYAVQAFELNATDYILKPFGQKRIEQAVNKVRATKA
N315 GIELGAKIQKMKEPPAIIFATAHDQYAVQAFELNATDYILKPFGQKRIEQAVNKVRATKA
NCTC8325 GIELGAKIQKMKEPPAIIFATAHDQYAVQAFELNATDYILKPFGQKRIEQAVNKVRATKA
Newman GIELGAKIQKMKEPPAIIFATAHDQYAVQAFELNATDYILKPFGQKRIEQAVNKVRATKA
USA300_FPR3757 GIELGAKIQKMKEPPAIIFATAHDQYAVQAFELNATDYILKPFGQKRIEQAVNKVRATKA
************************************************************
COL KDDNNASAIANDMSANFDQSLPVEIDDKIHMLKQQNIIGIGTHNGITTIHTTNHKYETTE
N315 KDDNNASAIANDMSANFDQSLPVEIDDKIHMLKQQNIIGIGTHNGITTIHTTNHKYETTE
NCTC8325 KDDNNASAIANDMSANFDQSLPVEIDDKIHMLKQQNIIGIGTHNGITTIHTTNHKYETTE
Newman KDDNNASAIANDMSANFDQSLPVEIDDKIHMLKQQNIIGIGTHNGITTIHTTNHKYETTE
USA300_FPR3757 KDDNNASAIANDMSANFDQSLPVEIDDKIHMLKQQNIIGIGTHNGITTIHTTNHKYETTE
************************************************************
COL PLNRYEKRLNPTYFIRIHRSYIINTKHIKEVQQWFNYTYMVILTNGVKMQVGRSFMKDFK
N315 PLNRYEKRLNPTYFIRIHRSYIINTKHIKEVQQWFNYTYMVILTNGVKMQVGRSFMKDFK
NCTC8325 PLNRYEKRLNPTYFIRIHRSYIINTKHIKEVQQWFNYTYMVILTNGVKMQVGRSFMKDFK
Newman PLNRYEKRLNPTYFIRIHRSYIINTKHIKEVQQWFNYTYMVILTNGVKMQVGRSFMKDFK
USA300_FPR3757 PLNRYEKRLNPTYFIRIHRSYIINTKHIKEVQQWFNYTYMVILTNGVKMQVGRSFMKDFK
************************************************************
COL ASIGLL
N315 ASIGLL
NCTC8325 ASIGLL
Newman ASIGLL
USA300_FPR3757 ASIGLL
******