PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001224000
• symbol^?: brnQ2
• synonym:
• description^?: branched-chain amino acid transport system II carrier protein

  descriptions from strain specific annotations:

  • branched-chain amino acid transport system II carrier protein
  • branched-chain amino acid transporter II carrier protein
  • branched-chain amino acid transport system II carrier protein, putative
  • Branched-chain amino acid transport system carrier protein
  • branched chain amino acid ABC transporter
  • branched chain amino acid ABC transporter carrier protein
  • branched-chain amino acid transport protein
  • LIVCS family branched chain amino acid:cation symporter
  • putative amino acid transport system
• strand^?: -
• coordinates^?: 1511749..1512954
• synteny block^?: BlockID0007350
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0302 (brnQ2)
N315:
SA0294
NCTC8325:
SAOUHSC_00282
Newman:
NWMN_0248
USA300_FPR3757:
SAUSA300_0306 (brnQ)
04-02981:
SA2981_0305
08BA02176:
C248_0294
11819-97:
MS7_0296
6850:
RSAU_000252 (brnQ)
71193:
ST398NM01_0319
ECT-R 2:
ECTR2_266 (brnQ)
ED133:
SAOV_0258
ED98:
SAAV_0273 (brnQ2)
HO 5096 0412:
SAEMRSA15_02620
JH1:
SaurJH1_0296
JH9:
SaurJH9_0289
JKD6008:
SAA6008_00282 (brnQ)
JKD6159:
SAA6159_00281 (brnQ)
LGA251:
SARLGA251_02680
M013:
M013TW_0287
MRSA252:
SAR0303
MSHR1132:
SAMSHR1132_02800
MSSA476:
SAS0283
Mu3:
SAHV_0303
Mu50:
SAV0306
MW2:
MW0283
RF122:
SAB0243c
ST398:
SAPIG0319 (brnQ)
T0131:
SAT0131_00308 (spa)
TCH60:
HMPREF0772_10190 (brnQ)
TW20:
SATW20_03110
USA300_TCH1516:
USA300HOU_0325 (brnQ1)
VC40:
SAVC_01280

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKKQVIISGLMLFSLFFGAGNLIFPPMLGHTAGQNMWIGMLGFALTGILLPFITVIVVAF
  N315            MKKQVIISGLMLFSLFFGAGNLIFPPILGHTAGQNMWIGMLGFALTGILLPFITVIVVAF
  NCTC8325        ----------MLFSLFFGAGNLIFPPMLGHTAGQNMWIGMLGFALTGILLPFITVIVVAF
  Newman          MKKQVIISGLMLFSLFFGAGNLIFPPMLGHTAGQNMWIGMLGFALTGILLPFITVIVVAF
  USA300_FPR3757  ----------MLFSLFFGAGNLIFPPMLGHTAGQNMWIGMLGFALTGILLPFITVIVVAF
                            ****************:*********************************
  
  COL             YDEGVESVGNRIHPWFGFIFAVVIYMSIGAFYGIPRAANVAYEIGTRHILPVHNQWTLII
  N315            YDEGVESVGNRIHPWFGFIFAVVIYMSIGAFYGIPRAANVAYEIGTRHILPVHNQWTLII
  NCTC8325        YDEGVESVGNRIHPWFGFIFAVVIYMSIGAFYGIPRAANVAYEIGTRHILPVHNQWTLII
  Newman          YDEGVESVGNRIHPWFGFIFAVVIYMSIGAFYGIPRAANVAYEIGTRHILPVHNQWTLII
  USA300_FPR3757  YDEGVESVGNRIHPWFGFIFAVVIYMSIGAFYGIPRAANVAYEIGTRHILPVHNQWTLII
                  ************************************************************
  
  COL             FAAIFFAIVYWISLNPSKIVDNLGKLLTPLLLLMVALLSIAVIFNPESALSAPKDKYITH
  N315            FAAIFFAIVYWISLNPSKIVDNLGKLLTPLLLLMVALLSIAVIFNPESALSAPKDKYITH
  NCTC8325        FAAIFFAIVYWISLNPSKIVDNLGKLLTPLLLLMVALLSIAVIFNPESALSAPKDKYITH
  Newman          FAAIFFAIVYWISLNPSKIVDNLGKLLTPLLLLMVALLSIAVIFNPESALSAPKDKYITH
  USA300_FPR3757  FAAIFFAIVYWISLNPSKIVDNLGKLLTPLLLLMVALLSIAVIFNPESALSAPKDKYITH
                  ************************************************************
  
  COL             PFISGSLEGYFTMDLVAALAFSVVIVNGYKFKGLTDRMKILKYVCFSGLIAAILLGMIYF
  N315            PFISGSLEGYFTMDLVAALAFSVVIVNGYKFKGLTDRMKILKYVCFSGLIAAILLGMIYF
  NCTC8325        PFISGSLEGYFTMDLVAALAFSVVIVNGYKFKGLTDRMKILKYVCFSGLIAAILLGMIYF
  Newman          PFISGSLEGYFTMDLVAALAFSVVIVNGYKFKGLTDRMKILKYVCFSGLIAAILLGMIYF
  USA300_FPR3757  PFISGSLEGYFTMDLVAALAFSVVIVNGYKFKGLTDRMKILKYVCFSGLIAAILLGMIYF
                  ************************************************************
  
  COL             ALAYVGASTAPGNFKDGTDILTYNSLRLFGSFGNLVFGMTVILACLTTCIGLVNACATFT
  N315            ALAYVGASTAPGNFKDGTDILTYNSLRVFGSFGNIVFGMTVILACLTTCIGLVNACATFT
  NCTC8325        ALAYVGASTAPGNFKDGTDILTYNSLRLFGSFGNLVFGMTVILACLTTCIGLVNACATFT
  Newman          ALAYVGASTAPGNFKDGTDILTYNSLRLFGSFGNLVFGMTVILACLTTCIGLVNACATFT
  USA300_FPR3757  ALAYVGASTAPGNFKDGTDILTYNSLRLFGSFGNLVFGMTVILACLTTCIGLVNACATFT
                  ***************************:******:*************************
  
  COL             KKHVPKFSYKIFALIFSIIGFLFTTLGLEMILKIAVPLLTLIYPVSIALVLISFANMFST
  N315            KKHVPKFSYKIFALIFSIIGFLFTTLGLEMILKIAVPLLTLIYPVSIALVLISFANMFST
  NCTC8325        KKHVPKFSYKIFALIFSIIGFLFTTLGLEMILKIAVPLLTLIYPVSIALVLISFANMFST
  Newman          KKHVPKFSYKIFALIFSIIGFLFTTLGLEMILKIAVPLLTLIYPVSIALVLISFANMFST
  USA300_FPR3757  KKHVPKFSYKIFALIFSIIGFLFTTLGLEMILKIAVPLLTLIYPVSIALVLISFANMFST
                  ************************************************************
  
  COL             FRFSWAYRLATVITLIISILQILNSFNLLHGVILKSFMMLPLADIDLAWLVPFMLFAIIG
  N315            FRFSWAYRLATVITLIISILQILNSFNLLHGVILKWFMMLPLADIDLAWLVPFMLFAIIG
  NCTC8325        FRFSWAYRLATVITLIISILQILNSFNLLHGVILKSFMMLPLADIDLAWLVPFMLFAIIG
  Newman          FRFSWAYRLATVITLIISILQILNSFNLLHGVILKSFMMLPLADIDLAWLVPFMLFAIIG
  USA300_FPR3757  FRFSWAYRLATVITLIISILQILNSFNLLHGVILKSFMMLPLADIDLAWLVPFMLFAIIG
                  *********************************** ************************
  
  COL             FIIDVFIRRPKQATT
  N315            FIIDVVIRRPKQATT
  NCTC8325        FIIDVFIRRPKQATT
  Newman          FIIDVFIRRPKQATT
  USA300_FPR3757  FIIDVFIRRPKQATT
                  *****.*********