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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
⊟Summary[edit | edit source]
- pan ID?: SAUPAN001397000
- symbol?: recT
- synonym:
- description?: recombinase
- recombinase
- putative phage-related DNA recombination protein
- phage protein
- Recombinational DNA repair protein RecT
- recombination protein RecT
- RecT protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1680714..1681634
- synteny block?: BlockID0008760
- occurrence?: in 24% of 33 strains
⊟Orthologs[edit | edit source]
COL:
—
N315:
—
NCTC8325:
—
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
SaurJH1_0329
JH9:
SaurJH9_0320
JKD6008:
SAA6008_02040 (recT)
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_02121
TCH60:
—
TW20:
SATW20_03400
USA300_TCH1516:
USA300HOU_1991 (recT)
VC40:
—
⊟Genome Viewer[edit | edit source]
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
Newman MTENNKLQTIEQQLVQEKNVSDNVLNKVRVLESQGNLELPNDYSPSNAMKQAWLQISQDN
USA300_FPR3757 MTENNKLQTIEQQLVQEKNVSDNVLNKVRVLESQGNLELPNDYSPSNAMKQAWLQISQDN
************************************************************
Newman KLMSCNDTSKANALLDMVTQGLNPAKNQCYFIPYGNKMQLQRSYHGNVMMLKRDAGAQDV
USA300_FPR3757 KLMSCNDTSKANALLDMVTQGLNPAKNQCYFIPYGNKMQLQRSYHGNVMMLKRDAGAQDV
************************************************************
Newman VAQVIYKGDTFKQEMGETGRIKAIKHEQDFFNIDKENIIGAYCTIVFNDGRDNYIEVMTI
USA300_FPR3757 VAQVIYKGDTFKQEMGETGRIKAIKHEQDFFNIDKENIIGAYCTIVFNDGRDNYIEVMTI
************************************************************
Newman EQIKQAWMQSSMIKDEKALQNSKTHNNFKEEMAKKTVINRAAKRYINTSTDSNIFKYAQE
USA300_FPR3757 EQIKQAWMQSSMIKDEKALQNSKTHNNFKEEMAKKTVINRAAKRYINTSTDSNLFKYAQE
*****************************************************:******
Newman SEQRQRKEVLDAEVEENANQEQLDFEQPVLEEAQYTELENDKPIDVSDFEEIKEPATEKE
USA300_FPR3757 SEQRQRKEVLDAEVEENANQEQLDFEQPVLEEAQYTELENDKPIDVSDFEEIKEPATEKE
************************************************************
Newman SEEEPF
USA300_FPR3757 SEEEPF
******