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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

Summary[edit | edit source]

  • pan ID?: SAUPAN001578000
  • symbol?: rinB
  • synonym:
  • description?: transcriptional activator RinB

      descriptions from strain specific annotations:

    • transcriptional activator RinB
    • phiSLT ORF 50-like protein
    • bacteriophage transcriptional regulator
    • regulator RinB
    • transcriptional activator
    • transcriptional activator RinB family protein
  • strand?: -
  • coordinates?: 1871736..1871909
  • synteny block?: BlockID0010370
  • occurrence?: in 44% of 34 strains

rinB : prophage transcriptional activator RinB [1]

All staphylococcal prophages to date encode a RinB paralogue. It may activate expression of the excisionase activity of prophage integrases, potentially via stabilization of late-gene transcriptional activators.

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_0341 (rinB)
    11819-97:
    MS7_1476
    6850:
    71193:
    ECT-R 2:
    ED133:
    SAOV_1937c
    ED98:
    HO 5096 0412:
    JH1:
    SaurJH1_1070
    JH9:
    SaurJH9_1051
    JKD6008:
    JKD6159:
    SAA6159_01386
    JSNZ:
    JSNZ_000843
    LGA251:
    M013:
    MRSA252:
    SAR1527
    MSHR1132:
    MSSA476:
    SAS0923
    Mu3:
    Mu50:
    MW2:
    MW1411
    RF122:
    ST398:
    SAPIG0364
    T0131:
    TCH60:
    HMPREF0772_11682 (rinB)
    TW20:
    USA300_TCH1516:
    USA300HOU_1461
    VC40:

Genome Viewer[edit | edit source]

COL
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MTKQILRLLFLLAMYELGKYVTEQVYIMMTANDDVEAPSDYEKIRAEVSW
    USA300_FPR3757  MIKQILRLLFLLAMYELGKYVTEQVYIMMTANDDVEAPSDYEKIRAEVSW
                    * ************************************************

  1. Z H Ye, C Y Lee
    Cloning, sequencing, and genetic characterization of regulatory genes, rinA and rinB, required for the activation of staphylococcal phage phi 11 int expression.
    J Bacteriol: 1993, 175(4);1095-102
    [PubMed:8432703] [WorldCat.org] [DOI] (P p)