PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001833000
• symbol^?: —
• synonym:
• description^?: phage portal protein

  descriptions from strain specific annotations:

  • phage portal protein
  • HK97 family phage portal protein
  • phiSLT ORF412-like protein, portal protein
  • prophage L54a, HK97 family portal protein
  • phage portal protein, HK97 family
  • portal protein
• strand^?: -
• coordinates^?: 2278070..2279308
• synteny block^?: BlockID0012090
• occurrence^?: in 45% of 33 strains

⊟Orthologs

COL:
SACOL0368
N315:
—
NCTC8325:
SAOUHSC_01537
Newman:
—
USA300_FPR3757:
SAUSA300_1403
04-02981:
—
08BA02176:
C248_0350
11819-97:
MS7_1467
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
SAAV_2031
HO 5096 0412:
SAEMRSA15_13730
JH1:
SaurJH1_1080
JH9:
SaurJH9_1060
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR1518
MSHR1132:
—
MSSA476:
SAS0933
Mu3:
—
Mu50:
—
MW2:
MW1400
RF122:
—
ST398:
SAPIG0374
T0131:
—
TCH60:
HMPREF0772_11691
TW20:
—
USA300_TCH1516:
USA300HOU_1452
VC40:
—

⊟Genome Viewer

COL
NCTC8325
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNVIAKENIVTRIKKKLIDNWIDQSTSKLYDFSPWKNRSFWGVINNTLETNETIFSAITK
  NCTC8325        MNVIAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITK
  USA300_FPR3757  MNVIAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITK
                  *************************:***********:**********************
  
  COL             LSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIER
  NCTC8325        LSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIER
  USA300_FPR3757  LSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIER
                  ************************************************************
  
  COL             DIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQ
  NCTC8325        DIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQ
  USA300_FPR3757  DIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQ
                  ************************************************************
  
  COL             GISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVGKEKRQQVLEDFKQYYEENG
  NCTC8325        GISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENG
  USA300_FPR3757  GISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVGKEKRQQVLEDFKQYYEENG
                  ****************************************..******************
  
  COL             GILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELN
  NCTC8325        GILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELN
  USA300_FPR3757  GILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELN
                  ******************************************:*****************
  
  COL             RFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRS
  NCTC8325        RFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRS
  USA300_FPR3757  RFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRS
                  ************************************************************
  
  COL             GYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES
  NCTC8325        GYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES
  USA300_FPR3757  GYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES
                  ****************************************************