PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001835000
• symbol^?: —
• synonym:
• description^?: terminase

  descriptions from strain specific annotations:

  • terminase
  • phiSLT ORF 101-like protein, terminase, small subunit
  • prophage L54a, terminase, small subunit
  • terminase small subunit
  • phage terminase, small subunit
  • phage terminase, small subunit, , P27
  • phage terminase small subunit
  • phage terminase small subunit P27
• strand^?: -
• coordinates^?: 2286299..2286604
• synteny block^?: BlockID0012110
• occurrence^?: in 45% of 33 strains

⊟Orthologs

COL:
SACOL0366
N315:
—
NCTC8325:
SAOUHSC_01539
Newman:
—
USA300_FPR3757:
SAUSA300_1405
04-02981:
—
08BA02176:
C248_0348
11819-97:
MS7_1469
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
SAAV_2033
HO 5096 0412:
SAEMRSA15_13750
JH1:
SaurJH1_1078
JH9:
SaurJH9_1058
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR1520
MSHR1132:
—
MSSA476:
SAS0931
Mu3:
—
Mu50:
—
MW2:
MW1402
RF122:
—
ST398:
SAPIG0372
T0131:
—
TCH60:
HMPREF0772_11689
TW20:
—
USA300_TCH1516:
USA300HOU_1454
VC40:
—

⊟Genome Viewer

COL
NCTC8325
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKLTKKQLKEYIEDYKKSDDILINLYIETYEFYCRLRDELKNSDLMIEHTNKAGASNIIK
  NCTC8325        MKLTKKQLKEYIEDYKKSDDILINLYIETYEFYCRLRDELKNSDLMIEHTNKAGASNIVK
  USA300_FPR3757  MKLTKKQLKEYIEDYKKSDDILINLYIETYEFYCRLRDELKNSDLMIEHTNKAGASNIVK
                  **********************************************************:*
  
  COL             NPLSIELTKTVQTLNNLLKSMGLTAAQRKKIVQEEGGFGDY
  NCTC8325        NPLSIELTKTVQTLNNLLKSMGLTAAQRKKIVQEEGGFGDY
  USA300_FPR3757  NPLSIELTKTVQTLNNLLKSMGLTAAQRKKIVQEEGGFGDY
                  *****************************************