PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001915000
• symbol^?: ssb
• synonym:
• description^?: single-stranded DNA-binding protein

  descriptions from strain specific annotations:

  • single-stranded DNA-binding protein
  • bacteriophage L54a single-stranded DNA binding protein
  • single-strand binding protein
  • single-strand DNA-binding family protein
  • single-stranded DNA-binding protein, putative
  • ssDNA-binding protein
  • putative single-strand DNA-binding protein
  • bacteriophage L54a, single-stranded DNA binding protein
  • single-strand DNA-binding protein of phage phi PVL
  • single-strand DNA-binding protein of phage phi Sa 2mw
  • single-stranded DNA-binding protein (SSB) (Helix-destabilizingprotein)
  • single-stranded DNA-binding protein ssb
• strand^?: +
• coordinates^?: 2400419..2400922
• synteny block^?: BlockID0012870
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0438 (ssb2)
N315:
SA0353 (ssb)
NCTC8325:
SAOUHSC_00349
Newman:
NWMN_0358
USA300_FPR3757:
SAUSA300_0367 (ssb)
04-02981:
SA2981_0364 (ssb)
08BA02176:
C248_0424 (ssb)
11819-97:
MS7_0356
6850:
RSAU_000311 (ssb)
71193:
ST398NM01_0446
ECT-R 2:
ECTR2_327 (ssb)
ED133:
SAOV_0390 (ssb2)
ED98:
SAAV_0334 (ssb2)
HO 5096 0412:
SAEMRSA15_03210 (ssb)
JH1:
SaurJH1_0425
JH9:
SaurJH9_0414
JKD6008:
SAA6008_00343 (ssb)
JKD6159:
SAA6159_00340 (ssb)
LGA251:
SARLGA251_03280 (ssb)
M013:
M013TW_0346
MRSA252:
SAR0363 (ssb)
MSHR1132:
SAMSHR1132_03390
MSSA476:
SAS0342
Mu3:
SAHV_0363 (ssb)
Mu50:
SAV0366 (ssb)
MW2:
MW0342 (ssb)
RF122:
SAB0317 (ssb)
ST398:
SAPIG0446
T0131:
SAT0131_00374 (gapB)
TCH60:
HMPREF0772_10128 (ssb)
TW20:
SATW20_04340 (ssb)
USA300_TCH1516:
USA300HOU_0388 (ssb1)
VC40:
SAVC_01580

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADN
  N315            MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADN
  NCTC8325        MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADN
  Newman          MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADN
  USA300_FPR3757  MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADN
                  ************************************************************
  
  COL             VNNYLSKGSLAGVDGRLQSRNYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEF
  N315            VNNYLSKGSLAGVDGRLQSRNYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEF
  NCTC8325        VNNYLSKGSLAGVDGRLQSRNYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEF
  Newman          VNNYLSKGSLAGVDGRLQSRNYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEF
  USA300_FPR3757  VNNYLSKGSLAGVDGRLQSRNYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEF
                  ************************************************************
  
  COL             QDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDISDDDLPF
  N315            QDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDISDDDLPF
  NCTC8325        QDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDISDDDLPF
  Newman          QDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDISDDDLPF
  USA300_FPR3757  QDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDISDDDLPF
                  ***********************************************