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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002107000
- symbol?: ssl4
- synonym:
- description?: staphylococcal superantigen-like protein 4
- staphylococcal superantigen-like protein 4
- superantigen-like protein
- Exotoxin 8
- exotoxin 9
- staphylococcal/Streptococcal toxin, beta-grasp domain protein
- Staphylococcal enterotoxin-like toxin
- staphylococcal exotoxin
- superantigen-like protein 11
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2590774..2595324
- synteny block?: BlockID0014130
- occurrence?: in 82% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0400 (set9)
08BA02176:
C248_0474
11819-97:
MS7_0400
6850:
—
71193:
ST398NM01_0492
ECT-R 2:
ECTR2_360
ED133:
SAOV_0444
ED98:
SAAV_0368
HO 5096 0412:
—
JH1:
SaurJH1_0460
JH9:
SaurJH9_0448
JKD6008:
SAA6008_00426
JKD6159:
—
LGA251:
SARLGA251_03630
M013:
M013TW_0386
MRSA252:
SAR0424
MSHR1132:
—
MSSA476:
SAS0387
Mu3:
SAHV_0422 (set9)
Mu50:
—
MW2:
MW0385 (set19)
RF122:
—
ST398:
SAPIG0492
T0131:
SAT0131_00463 (rpsD)
TCH60:
HMPREF0772_10093
TW20:
SATW20_04990
USA300_TCH1516:
USA300HOU_0426 (set19)
VC40:
SAVC_01750
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKITTIAKTSLALGLLTTGVITTTTQAANATTPSSTKVEAPQSTPPSTKIEAPQSKPNAT
N315 MKITTIAKTSLALGLLTTGVITTTTQEANATTPSSTKVEAPQSTPPSTKVEAPQSKPNAT
NCTC8325 MKITTIAKTSLALGLLTTGVITTTTQAANATTLSSTKVEAPQSTPPSTKIEAPQSKPNAT
Newman MKITTIAKTSLALGLLTTGVITTTTQAANATTPSSTKVEAPQSTPPSTKIEAPQSKPNAT
USA300_FPR3757 MKITTIAKTSLALGLLTTGVITTTTQAANATTPSSTKVEAPQSTPPSTKIEAPQSKPNAT
************************** ***** ****************:**********
COL TPPSTKVEAPQQTANATTPPSTKVTTPPSTNTPQPMQSTKSDTPQSPTTKQVPTEINPKF
N315 TPPSTKVETPQQTPNATTPSSTKV-----------------ETPQSPTTKQVPTEINPKF
NCTC8325 TPPSTKVEAPQQTANATTPPSTKVTTPPSTNTPQPMQSTKSDTPQSPTTKQVPTEINPKF
Newman TPPSTKVEAPQQTANATTPPSTKVTTPPSTNTPQPMQSTKSDTPQSPTTKQVPTEINPKF
USA300_FPR3757 TPPSTKVEAPQQTANATTPPSTKVTTPPSTNTPQPMQSTKSDTPQSPTTKQVPTEINPKF
********:****.*****.**** :******************
COL KDLRAYYTKPSLEFKNEIGIILKKWTTIRFMNVVPDYFIYKIALVGKDDKKYGEGVHRNV
N315 KDLRAYYTKPSLEFKNEIGIILKKWTTIRFMNIVPDYFIYKIALVGKDDKKYDEGVHRNV
NCTC8325 KDLRAYYTKPSLEFKNEIGIILKKWTTIRFMNVVPDYFIYKIALVGKDDKKYGEGVHRNV
Newman KDLRAYYTKPSLEFKNEIGIILKKWTTIRFMNVVPDYFIYKIALVGKDDKKYGEGVHRNV
USA300_FPR3757 KDLRAYYTKPSLEFKNEIGIILKKWTTIRFMNVVPDYFIYKIALVGKDDKKYGEGVHRNV
********************************:*******************.*******
COL DVFVVLEE-NNYNLEKYSVGGITKSNSKKVDHKAGVRITKEDNKGTISHDVSEFKITKEQ
N315 DVFVVLEEKNKYGVERYSVGGITKSNSKKVDHKAGVRITKEDNKGTISHDVSEFKITKEQ
NCTC8325 DVFVVLEE-NNYNLEKYSVGGITKSNSKKVDHKAGVRITKEDNKGTISHDVSEFKITKEQ
Newman DVFVVLEE-NNYNLEKYSVGGITKSNSKKVDHKAGVRITKEDNKGTISHDVSEFKITKEQ
USA300_FPR3757 DVFVVLEE-NNYNLEKYSVGGITKSNSKKVDHKAGVRITKEDNKGTISHDVSEFKITKEQ
******** *:*.:*:********************************************
COL ISLKELDFKLRKQLIEKNNLYGNVGSGKIVIKMKNGGKYTFELHKKLQENRMADVINSEQ
N315 ISLKELDFKLRKQLIENHNLYGNVGSGKIVINMKNGGKYTFELHKKLQENRMADVIDGTN
NCTC8325 ISLKELDFKLRKQLIEKNNLYGNVGSGKIVIKMKNGGKYTFELHKKLQENRMADVIDGTN
Newman ISLKELDFKLRKQLIEKNNLYGNVGSGKIVIKMKNGGKYTFELHKKLQENRMADVIDGTN
USA300_FPR3757 ISLKELDFKLRKQLIEKNNLYGNVGSGKIVIKMKNGGKYTFELHKKLQENRMADVIDGTN
****************::*************:************************:. :
COL IKNIEVNLK
N315 IDNIEVNIK
NCTC8325 IDNIEVNIK
Newman IDNIEVNIK
USA300_FPR3757 IDNIEVNIK
*.*****:*