Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN002110000
- symbol?: ssl5
- synonym:
- description?: staphylococcal superantigen-like protein 5
- staphylococcal superantigen-like protein 5
- superantigen-like protein 5
- superantigen-like protein SSL5
- Staphylococcal exotoxin
- Exotoxin 10
- exotoxin 3
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2595688..2597821
- synteny block?: BlockID0014160
- occurrence?: in 94% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0401 (set10)
08BA02176:
C248_0477 (set3)
11819-97:
MS7_0401 (set3)
6850:
RSAU_000355
71193:
ST398NM01_0495
ECT-R 2:
ECTR2_361
ED133:
SAOV_0445
ED98:
SAAV_0369
HO 5096 0412:
SAEMRSA15_03570 (set3)
JH1:
SaurJH1_0461
JH9:
SaurJH9_0449
JKD6008:
SAA6008_00427 (set10)
JKD6159:
—
LGA251:
SARLGA251_03640 (set3)
M013:
M013TW_0387
MRSA252:
SAR0427 (set3)
MSHR1132:
SAMSHR1132_03750
MSSA476:
SAS0388
Mu3:
SAHV_0423 (set10)
Mu50:
SAV0425 (set10)
MW2:
MW0386 (set20)
RF122:
SAB0379 (set7)
ST398:
SAPIG0495
T0131:
SAT0131_00464
TCH60:
HMPREF0772_10090 (set3)
TW20:
SATW20_05010 (set3)
USA300_TCH1516:
USA300HOU_0427 (set20)
VC40:
SAVC_01755
⊟Genome Viewer[edit | edit source]
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
N315 MKMAAIAKASLALGILATGTITSLHQTVNASEHEAKYENVTKDIFDLRDYYSGASKELKN
NCTC8325 MKMTAIAKASLALGILATGTITSLHQTVNASEHKAKYENVTKDIFDLRDYYSGASKELKN
Newman MKMTAIAKASLALGILATGTITSLHQTVNASEHKAKYENVTKDIFDLRDYYSGASKELKN
USA300_FPR3757 MKMTAIAKASLALGILATGTITSLHQTVNASEHKAKYENVTKDIFDLRDYYSGASKELKN
***:*****************************:**************************
N315 VTGYRYSKGGKHYLIFDKNRKFTRVQIFGKDIERFKARKNPGLDIFVVKEAENRNGTVFS
NCTC8325 VTGYRYSKGGKHYLIFDKNRKFTRVQIFGKDIERFKARKNPGLDIFVVKEAENRNGTVFS
Newman VTGYRYSKGGKHYLIFDKNRKFTRVQIFGKDIERFKARKNPGLDIFVVKEAENRNGTVFS
USA300_FPR3757 VTGYRYSKGGKHYLIFDKNRKFTRVQIFGKDIERFKARKNPGLDIFVVKEAENRNGTVFS
************************************************************
N315 YGGVTKKNQDAYYDYINAPRFQIKRDEGDGIATYGRVHYIYKEEISLKELDFKLRQYLIQ
NCTC8325 YGGVTKKNQDAYYDYINAPRFQIKRDEGDGIATYGRVHYIYKEEISLKELDFKLRQYLIQ
Newman YGGVTKKNQDAYYDYINAPRFQIKRDEGDGIATYGRVHYIYKEEISLKELDFKLRQYLIQ
USA300_FPR3757 YGGVTKKNQDAYYDYINAPRFQIKRDEGDGIATYGRVHYIYKEEISLKELDFKLRQYLIQ
************************************************************
N315 NFDLYKKFPKDSKIKVIMKDGGYYTFELNKKLQTNRMSDVIDGRNIEKIEANIR
NCTC8325 NFDLYKKFPKDSKIKVIMKDGGYYTFELNKKLQTNRMSDVIDGRNIEKIEANIR
Newman NFDLYKKFPKDSKIKVIMKDGGYYTFELNKKLQTNRMSDVIDGRNIEKIEANIR
USA300_FPR3757 NFDLYKKFPKDSKIKVIMKDGGYYTFELNKKLQTNRMSDVIDGRNIEKIEANIR
******************************************************