PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002114000
• symbol^?: ssl8
• synonym:
• description^?: staphylococcal superantigen-like protein 8

  descriptions from strain specific annotations:

  • staphylococcal superantigen-like protein 8
  • superantigen-like protein
  • superantigen-like protein SSL8
  • exotoxin
  • Exotoxin 12
  • staphylococcal/Streptococcal toxin, beta-grasp domain protein
  • Staphylococcal enterotoxin-like toxin
• strand^?: +
• coordinates^?: 2602198..2615732
• synteny block^?: BlockID0014200
• occurrence^?: in 73% of 33 strains

⊟Orthologs

COL:
—
N315:
SA0388 (set12)
NCTC8325:
SAOUHSC_00393
Newman:
NWMN_0395 (set8nm)
USA300_FPR3757:
SAUSA300_0402
04-02981:
SA2981_0403 (set12)
08BA02176:
—
11819-97:
MS7_0403
6850:
RSAU_000357
71193:
—
ECT-R 2:
ECTR2_363
ED133:
SAOV_0448
ED98:
SAAV_0371
HO 5096 0412:
—
JH1:
SaurJH1_0463
JH9:
SaurJH9_0451
JKD6008:
SAA6008_00431 (set12)
JKD6159:
—
LGA251:
SARLGA251_03660
M013:
M013TW_0389
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS0391
Mu3:
SAHV_0425 (set12)
Mu50:
SAV0427 (set12)
MW2:
MW0389 (set23)
RF122:
SAB0381 (set4)
ST398:
—
T0131:
SAT0131_00467 (serA)
TCH60:
—
TW20:
SATW20_05040
USA300_TCH1516:
USA300HOU_0430 (set23)
VC40:
SAVC_01770

⊟Genome Viewer

N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  N315            MKFTAIAKAIFVLGILTTSVMITENQSVNAKGKYEKMNRLYDTNKLHQYYSGPSYELTNV
  NCTC8325        MKFTVIAKAIFILGILTTSVMITENQSVNAKGKYEKMNRLYDTNKLHQYYSGPSYELTNV
  Newman          MKFTVIAKAIFILGILTTSVMITENQSVNAKGKYEKMNRLYDTNKLHQYYSGPSYELTNV
  USA300_FPR3757  MKFTVIAKAIFILGILTTSVMITENQSVNAKGKYEKMNRLYDTNKLHQYYSGPSYELTNV
                  ****.******:************************************************
  
  N315            SGQSQGYYDSNVLLFNQQNQKFQVFLLGKDENKYKEKTHGLDVFAVPELVDLDGRIFSVS
  NCTC8325        SGQSQGYYDSNVLLFNQQNQKFQVFLLGKDENKYKEKTHGLDVFAVPELVDLDGRIFSVS
  Newman          SGQSQGYYDSNVLLFNQQNQKFQVFLLGKDENKYKEKTHGLDVFAVPELVDLDGRIFSVS
  USA300_FPR3757  SGQSQGYYDSNVLLFNQQNQKFQVFLLGKDENKYKEKTHGLDVFAVPELVDLDGRIFSVS
                  ************************************************************
  
  N315            GVTKKNVKSIFESLRTPNLLVKKIDDKDGFSIDEFFFIQKEEVSLKELDFKIRKLLIKKY
  NCTC8325        GVTKKNVKSIFESLRTPNLLVKKIDDKDGFSIDEFFFIQKEEVSLKELDFKIRKLLIKKY
  Newman          GVTKKNVKSIFESLRTPNLLVKKIDDKDGFSIDEFFFIQKEEVSLKELDFKIRKLLIKKY
  USA300_FPR3757  GVTKKNVKSIFESLRTPNLLVKKIDDKDGFSIDEFFFIQKEEVSLKELDFKIRKLLIKKY
                  ************************************************************
  
  N315            KLYEGSADKGRIVINMKDENKYEIDLSDKLDFERMADVINSEQIKNIEVNLK
  NCTC8325        KLYEGSADKGRIVINMKDENKYEIDLSDKLDFERMADVINSEQIKNIEVNLK
  Newman          KLYEGSADKGRIVINMKDENKYEIDLSDKLDFERMADVINSEQIKNIEVNLK
  USA300_FPR3757  KLYEGSADKGRIVINMKDENKYEIDLSDKLDFERMADVINSEQIKNIEVNLK
                  ****************************************************