PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002129000
• symbol^?: ssl11
• synonym:
• description^?: staphylococcal superantigen-like protein 11

  descriptions from strain specific annotations:

  • staphylococcal superantigen-like protein 11
  • superantigen-like protein
  • Exotoxin 15
  • exotoxin
  • Exotoxin type C
  • staphylococcal/Streptococcal toxin, beta-grasp domain protein
  • Staphylococcal enterotoxin-like toxin
  • staphylococcal exotoxin
• strand^?: +
• coordinates^?: 2623073..2623774
• synteny block^?: BlockID0014350
• occurrence^?: in 94% of 33 strains

⊟Orthologs

COL:
SACOL0478
N315:
SA0393 (set15)
NCTC8325:
SAOUHSC_00399
Newman:
NWMN_0400 (set11nm)
USA300_FPR3757:
SAUSA300_0407
04-02981:
SA2981_0409 (set15)
08BA02176:
C248_0484
11819-97:
MS7_0408 (set15)
6850:
RSAU_000364
71193:
ST398NM01_0501
ECT-R 2:
ECTR2_368
ED133:
SAOV_0453
ED98:
SAAV_0376
HO 5096 0412:
SAEMRSA15_03630
JH1:
SaurJH1_0468
JH9:
SaurJH9_0456
JKD6008:
SAA6008_00436 (set15)
JKD6159:
—
LGA251:
SARLGA251_03710
M013:
M013TW_0394
MRSA252:
SAR0435
MSHR1132:
—
MSSA476:
SAS0396
Mu3:
SAHV_0431 (set15)
Mu50:
SAV0433 (set15)
MW2:
MW0394 (set26)
RF122:
SAB0386 (set1)
ST398:
SAPIG0501
T0131:
SAT0131_00472 (tyrS)
TCH60:
HMPREF0772_10084
TW20:
SATW20_05100
USA300_TCH1516:
USA300HOU_0435 (set)
VC40:
SAVC_01795

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKLKNIAKASLALGILTTGMITTTAQPVKASTLEVRSQATQDLSEYYNRPFFEYTNQSGY
  N315            MKLKNIAKASLALGILTTGMITTTAQPVKASTLEVRSQATQDLSEYYKGRGFELTNVTGY
  NCTC8325        MKLKNIAKASLALGILTTGMITTTAQPVKASTLEVRSQATQDLSEYYNRPFFEYTNQSGY
  Newman          MKLKNIAKASLALGILTTGMITTTAQPVKASTLEVRSQATQDLSEYYNRPFFEYTNQSGY
  USA300_FPR3757  MKLKNIAKASLALGILTTGMITTTAQPVKASTLEVRSQATQDLSEYYNRPFFEYTNQSGY
                  ***********************************************:   ** ** :**
  
  COL             KEEGKVTFTPNYQLIDVTLTGNEKQNFGED--ISNVDIFVVRENSDRSGNTASIGGITKT
  N315            KYGNKVTFIDNSQQIDVTLTGNEKLTVKDDDEVSNVDVFVVREGSDKSAITTSIGGITKT
  NCTC8325        KEEGKVTFTPNYQLIDVTLTGNEKQNFGED--ISNVDIFVVRENSDRSGNTASIGGITKT
  Newman          KEEGKVTFTPNYQLIDVTLTGNEKQNFGED--ISNVDIFVVRENSDRSGNTASIGGITKT
  USA300_FPR3757  KEEGKVTFTPNYQLIDVTLTGNEKQNFGED--ISNVDIFVVRENSDRSGNTASIGGITKT
                  *  .****  * * ********** .. :*  :****:*****.**:*. *:********
  
  COL             NGSNYIDKVKDVNLIITKNIDSVTSTSTSSTYTINKEEISLKELDFKLRKHLIDKHNLYK
  N315            NGTQHKDTVQNVNLSVSKSTGQHTTSVTSEYYSIYKEEISLKELDFKLRKHLIDKHDLYK
  NCTC8325        NGSNYIDKVKDVNLIITKNIDSVTSTSTSSTYTINKEEISLKELDFKLRKHLIDKHNLYK
  Newman          NGSNYIDKVKDVNLIITKNIDSVTSTSTSSTYTINKEEISLKELDFKLRKHLIDKHNLYK
  USA300_FPR3757  NGSNYIDKVKDVNLIITKNIDSVTSTSTSSTYTINKEEISLKELDFKLRKHLIDKHNLYK
                  **::: *.*::*** ::*. .. *:: **. *:* *********************:***
  
  COL             TEPKDSKIRITMKDGGFYTFELNKKLQTHRMGDVIDGRNIEKIEVNL
  N315            TEPKDSKIRITMKNGGYYTFELNKKLQPHRMGDTIDSRNIEKIEVNL
  NCTC8325        TEPKDSKIRITMKDGGFYTFELNKKLQTHRMGDVIDGRNIEKIEVNL
  Newman          TEPKDSKIRITMKDGGFYTFELNKKLQTHRMGDVIDGRNIEKIEVNL
  USA300_FPR3757  TEPKDSKIRITMKDGGFYTFELNKKLQTHRMGDVIDGRNIEKIEVNL
                  *************:**:**********.*****.**.**********