PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002249000
• symbol^?: —
• synonym:
• description^?: RNA-binding protein S1

  descriptions from strain specific annotations:

  • RNA-binding protein S1
  • RPS1-like RNA binding domain protein
  • putative RNA binding protein
  • RNA binding protein, contains ribosomal protein S1 domain
  • general stress protein 13 (GSP13)
  • polyribonucleotide nucleotidyltransferase
  • RNA binding S1 domain-containing protein
  • S1 RNA binding domain-containing protein
  • S1-type RNA-binding domain-containing protein
• strand^?: +
• coordinates^?: 2756524..2756925
• synteny block^?: BlockID0015480
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0552
N315:
SA0466
NCTC8325:
SAOUHSC_00483
Newman:
NWMN_0470
USA300_FPR3757:
SAUSA300_0486
04-02981:
SA2981_0483
08BA02176:
C248_0564
11819-97:
MS7_0485
6850:
RSAU_000447
71193:
ST398NM01_0574
ECT-R 2:
ECTR2_448
ED133:
SAOV_0530
ED98:
SAAV_0455
HO 5096 0412:
SAEMRSA15_04340
JH1:
SaurJH1_0543
JH9:
SaurJH9_0530
JKD6008:
SAA6008_00513
JKD6159:
SAA6159_00459
LGA251:
SARLGA251_04420
M013:
M013TW_0480
MRSA252:
SAR0509
MSHR1132:
SAMSHR1132_04520
MSSA476:
SAS0465
Mu3:
SAHV_0505
Mu50:
SAV0508
MW2:
MW0463
RF122:
SAB0457
ST398:
SAPIG0574
T0131:
SAT0131_00554
TCH60:
HMPREF0772_10011
TW20:
SATW20_05760
USA300_TCH1516:
USA300HOU_0502
VC40:
SAVC_02125

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MSIEVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEEHLSVGDEVDVKV
  N315            MSIEVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEEHLSVGDEVDVKV
  NCTC8325        MSIEVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEEHLSVGDEVDVKV
  Newman          MSIEVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEEHLSVGDEVDVKV
  USA300_FPR3757  MSIEVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEEHLSVGDEVDVKV
                  ************************************************************
  
  COL             LSIADDGKISLSIKKAKDRPRRQHTSKPSHQKPVQKAEDFEKKLSNFLKDSEDKLTSIKR
  N315            LSIADDGKISLSIKKAKDRPRRQHTSKPSHQKPVQKAEDFEKKLSNFLKDSEDKLTSIKR
  NCTC8325        LSIADDGKISLSIKKAKDRPRRQHTSKPSHQKPVQKAEDFEKKLSNFLKDSEDKLTSIKR
  Newman          LSIADDGKISLSIKKAKDRPRRQHTSKPSHQKPVQKAEDFEKKLSNFLKDSEDKLTSIKR
  USA300_FPR3757  LSIADDGKISLSIKKAKDRPRRQHTSKPSHQKPVQKAEDFEKKLSNFLKDSEDKLTSIKR
                  ************************************************************
  
  COL             QTESRRGGKGSRR
  N315            QTESRRGGKGSRR
  NCTC8325        QTESRRGGKGSRR
  Newman          QTESRRGGKGSRR
  USA300_FPR3757  QTESRRGGKGSRR
                  *************