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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002282000
- symbol?: pdxR
- synonym:
- description?: PLP-dependent aminotransferase family protein
- PLP-dependent aminotransferase family protein
- GntR family regulatory protein
- GntR family transcriptional regulator
- transcriptional regulator, gntR family protein
- transcription regulator, GntR family
- bacterial regulatory s, gntR family protein
- putative GntR family transcriptional regulator
- putative transcriptional regulator ofpyridoxine metabolism
- regulatory proteins, gntR family protein
- transcriptional regulator of GntR family
- transcriptional regulator of pyridoxine metabolism
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 2804109..2805056
- synteny block?: BlockID0015810
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0493
08BA02176:
C248_0589
11819-97:
MS7_0507
6850:
RSAU_000469
71193:
ST398NM01_0593
ECT-R 2:
ECTR2_471
ED133:
SAOV_0553c
ED98:
SAAV_0479
HO 5096 0412:
SAEMRSA15_04440
JH1:
SaurJH1_0554
JH9:
SaurJH9_0540
JKD6008:
SAA6008_00524
JKD6159:
SAA6159_00471
LGA251:
SARLGA251_04520
M013:
M013TW_0502
MRSA252:
SAR0521
MSHR1132:
SAMSHR1132_04620
MSSA476:
SAS0475
Mu3:
SAHV_0515
Mu50:
SAV0518
MW2:
MW0473
RF122:
SAB0468c
ST398:
SAPIG0593
T0131:
SAT0131_00567
TCH60:
HMPREF0772_12673
TW20:
SATW20_05860
USA300_TCH1516:
USA300HOU_0510
VC40:
SAVC_02175
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKNTLYHQLYEKLKKQIIEGQFKEGDKFYSKRQLSKHLSISQTTVEHAYQLLLDEGYIYS
N315 MKNTLYHQLYEKLKKQIIEGQFKEGDKFYSKRQLSKHLSISQTTVEHAYQLLLDEGYIYS
NCTC8325 MKNTLYHQLYEKLKKQIIEGQFKEGDKFYSKRQLSKHLSISQTTVEHAYQLLLDEGYIYS
Newman MKNTLYHQLYEKLKKQIIEGQFKEGDKFYSKRQLSKHLSISQTTVEHAYQLLLDEGYIYS
USA300_FPR3757 MKNTLYHQLYEKLKKQIIEGQFKEGDKFYSKRQLSKHLSISQTTVEHAYQLLLDEGYIYS
************************************************************
COL RPRSGYFVSEIESLTILNNQPIPSLFDDDSYKPKASDEAYDYAFNLDEIDTKHFPIELFR
N315 RPRSGYFVSEIESLTILNNQPIPSLFDDDSYKPKASDEAYDYAFNLDEIDTKHFPIELFR
NCTC8325 RPRSGYFVSEIESLTILNNQPIPSLFDDDSYKPKASDEAYDYAFNLDEIDTKHFPIELFR
Newman RPRSGYFVSEIESLTILNNQPIPSLFDDDSYKPKASDEAYDYAFNLDEIDTKHFPIELFR
USA300_FPR3757 RPRSGYFVSEIESLTILNNQPIPSLFDDDSYKPKASDEAYDYAFNLDEIDTKHFPIELFR
************************************************************
COL KYSKDLYDTNHLNQLRRGHFQGELHLRFQLAFYLFTNRGVICDPNQIIIGSSTEQLVNQL
N315 KYSKDLYDTNHLNQLRRGHFQGELHLRFQLAFYLFTNRGVICDPNQIIIGSSTEQLVNQL
NCTC8325 KYSKDLYDTNHLNQLRRGHFQGELHLRFQLAFYLFTNRGVICDPNQIIIGSSTEQLVNQL
Newman KYSKDLYDTNHLNQLRRGHFQGELHLRFQLAFYLFTNRGVICDPNQIIIGSSTEQLVNQL
USA300_FPR3757 KYSKDLYDTNHLNQLRRGHFQGELHLRFQLAFYLFTNRGVICDPNQIIIGSSTEQLVNQL
************************************************************
COL VDLLYTSTFIIEKPSYPPIKNILDKKQVEYEQIEVEDNGINVDEVIKSQKNIVYITPSHQ
N315 VDLLYTSTFIIEKPSYPPIKNILDKKQVEYEQIEVEDNGINVDEVIKSQKNIVYITPSHQ
NCTC8325 VDLLYTSTFIIEKPSYPPIKNILDKKQVEYEQIEVEDNGINVDEVIKSQKNIVYITPSHQ
Newman VDLLYTSTFIIEKPSYPPIKNILDKKQVEYEQIEVEDNGINVDEVIKSQKNIVYITPSHQ
USA300_FPR3757 VDLLYTSTFIIEKPSYPPIKNILDKKQVEYEQIEVEDNGINVDEVIKSQKNIVYITPSHQ
************************************************************
COL FPTGYVMDLKKRTQLIQWAQEKEERFIIEDDYDSEFRYFGKPIPAIQGLYSRGEKVIYIS
N315 FPTGYVMDLKKRTQLIQWAQEKEERFIIEDDYDSEFRYFGKPIPAIQGLYSRGEKVIYIS
NCTC8325 FPTGYVMDLKKRTQLIQWAQEKEERFIIEDDYDSEFRYFGKPIPAIQGLYSRGEKVIYIS
Newman FPTGYVMDLKKRTQLIQWAQEKEERFIIEDDYDSEFRYFGKPIPAIQGLYSRGEKVIYIS
USA300_FPR3757 FPTGYVMDLKKRTQLIQWAQEKEERFIIEDDYDSEFRYFGKPIPAIQGLYSRGEKVIYIS
************************************************************
COL TFSKSIFPSCRVAYMVLPYSIMKKYHSQNHIEGNTVPVHMQNLIATFISSGGFERHLNKM
N315 TFSKSIFPSCRVAYMVLPYSIMKKYHSQNHIEGNTVPVHMQNLIATFISSGGFERHLNKM
NCTC8325 TFSKSIFPSCRVAYMVLPYSIMKKYHSQNHIEGNTVPVHMQNLIATFISSGGFERHLNKM
Newman TFSKSIFPSCRVAYMVLPYSIMKKYHSQNHIEGNTVPVHMQNLIATFISSGGFERHLNKM
USA300_FPR3757 TFSKSIFPSCRVAYMVLPYSIMKKYHSQNHIEGNTVPVHMQNLIATFISSGGFERHLNKM
************************************************************
COL RRIYRRKLTYILKRLKPYKEQLDIQGAETGMHFTITVKNGLTLQECLDRANKVKLKLQVY
N315 RRIYRRKLTYILKRLKPYKEQLDIQGAETGMHFTITVKNGLTLQECLDRANKVKLKLQVY
NCTC8325 RRIYRRKLTYILKRLKPYKEQLDIQGAETGMHFTITVKNGLTLQECLDRANKVKLKLQVY
Newman RRIYRRKLTYILKRLKPYKEQLDIQGAETGMHFTITVKNGLTLQECLDRANKVKLKLQVY
USA300_FPR3757 RRIYRRKLTYILKRLKPYKEQLDIQGAETGMHFTITVKNGLTLQECLDRANKVKLKLQVY
************************************************************
COL NFDDDQDYKKTPKFILGFGGIDDDALKPHVDALIKSLIIK
N315 NFDDDQDYKKTPKFILGFGGIDDDALKPHVDALIKSLIIK
NCTC8325 NFDDDQDYKKTPKFILGFGGIDDDALKPHVDALIKSLIIK
Newman NFDDDQDYKKTPKFILGFGGIDDDALKPHVDALIKSLIIK
USA300_FPR3757 NFDDDQDYKKTPKFILGFGGIDDDALKPHVDALIKSLIIK
****************************************