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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002338000
- symbol?: —
- synonym:
- description?: glycosyl transferase family 1
- glycosyl transferase family 1
- glycosyltransferase
- glycosyl transferase, group 1 family protein
- glycosyl transferase, putative
- poly (glycerol-phosphate) alpha-glucosyltransferase
- putative glycosyl transferase
- glycoside hydrolase family protein
- glycosyl transferase family protein
- glycosyl transferases group 1 family protein
- group 1 glycosyl transferase
- putative poly(Glycerol-phosphate)alpha-glucosyltransferase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2876798..2878270
- synteny block?: BlockID0016370
- occurrence?: in 100% of 34 strains
sdgA : serine-aspartate repeat protein O-glycosyltransferase SdgA [1]
• A crystal structure is available: 7EC1
• SdgB can add a single N-acetylglucosamine residue to each aspartate of an SD-repeat. SdgA can extend NAG-primed asparates by an additional N-acetylglucosamine resulting in NAG-NAG disaccharide-modified serine-aspartate repeat proteins.
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0541
08BA02176:
C248_0639
11819-97:
MS7_0554
6850:
RSAU_000518
71193:
ST398NM01_0638
ECT-R 2:
ECTR2_518
ED133:
SAOV_0599
ED98:
SAAV_0527
HO 5096 0412:
SAEMRSA15_04910
JH1:
SaurJH1_0601
JH9:
SaurJH9_0587
JKD6008:
SAA6008_00572
JKD6159:
SAA6159_00518
JSNZ:
JSNZ_000522
LGA251:
SARLGA251_05000
M013:
M013TW_0551
MRSA252:
SAR0568
MSHR1132:
SAMSHR1132_05080
MSSA476:
SAS0522
Mu3:
SAHV_0562
Mu50:
SAV0564
MW2:
MW0519
RF122:
SAB0514
ST398:
SAPIG0638
T0131:
SAT0131_00625
TCH60:
HMPREF0772_12625
TW20:
SATW20_06340
USA300_TCH1516:
USA300HOU_0558
VC40:
SAVC_02410
⊟Genome Viewer[edit | edit source]
COL | |
N315 | |
NCTC8325 | |
Newman | |
USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNYILGTILESKITGVEKAQINRLKLFKQHGISSKCVYVKWNPYSYTYAKQHQIENDVFT
N315 MNYILGTILESKITGVEKAQINRLKLFKQHGISSKCVYVKWNPYSYTYAKQHQIENDVFT
NCTC8325 MNYILGTILESKITGVEKAQINRLKLFKQHGISSKCVYVKWNPYSYTYAKQHQIENDVFT
Newman MNYILGTILESKITGVEKAQINRLKLFKQHGISSKCVYVKWNPYSYTYAKQHQIENDVFT
USA300_FPR3757 MNYILGTILESKITGVEKAQINRLKLFKQHGISSKCVYVKWNPYSYTYAKQHQIENDVFT
************************************************************
COL MYDYFQKAINYKKTKQVNWIQYWEKSCRYTLKFVENSNDVRIYDEEQFVMYAHFLDKQYH
N315 MYDYFQKAINYKKTKQVNWIQYWEKSCRYTLKFVENSNDVRIYDEEQFVMYAHFLDKQYH
NCTC8325 MYDYFQKAINYKKTKQVNWIQYWEKSCRYTLKFVENSNDVRIYDEEQFVMYAHFLDKQYH
Newman MYDYFQKAINYKKTKQVNWIQYWEKSCRYTLKFVENSNDVRIYDEEQFVMYAHFLDKQYH
USA300_FPR3757 MYDYFQKAINYKKTKQVNWIQYWEKSCRYTLKFVENSNDVRIYDEEQFVMYAHFLDKQYH
************************************************************
COL QLNYVNYFDHKRRKVKRELYDGRGFLSCSRILGEGQRIVLENYYTPNGEIVIQKYFDDIK
N315 QLNYVNYFDHKRRKVKRELYDGRGFLSCSRILGEGQRIVLENYYTPNGEIVIQKYFDDIK
NCTC8325 QLNYVNYFDHKRRKVKRELYDGRGFLSCSRILGEGQRIVLENYYTPNGEIVIQKYFDDIK
Newman QLNYVNYFDHKRRKVKRELYDGRGFLSCSRILGEGQRIVLENYYTPNGEIVIQKYFDDIK
USA300_FPR3757 QLNYVNYFDHKRRKVKRELYDGRGFLSCSRILGEGQRIVLENYYTPNGEIVIQKYFDDIK
************************************************************
COL GKNTLTKVILNEDQHQQFFDTEDELVQYFLHQLCKNNDQIILDRPHELGNVIAGLNQSIP
N315 GKNTLTKVILNEDQQQQFFDTEDELVQYFLHQLCKNNDQIILDRPHELGNVIAGLNQSIP
NCTC8325 GKNTLTKVILNEDQHQQFFDTEDELVQYFLHQLCKNNDQIILDRPHELGNVIAGLNQSIP
Newman GKNTLTKVILNEDQHQQFFDTEDELVQYFLHQLCKNNDQIILDRPHELGNVIAGLNQSIP
USA300_FPR3757 GKNTLTKVILNEDQHQQFFDTEDELVQYFLHQLCKNNDQIILDRPHELGNVIAGLNQSIP
**************:*********************************************
COL VIVVLHSTHLSGAGNGIKSFYKTVFNNLTRYKAIVVSTEKQCQDISQYIENKIPVINIPV
N315 VVVVLHSTHLSGTGNGIKSFYKTVFNNLTRYKAIVVSTEQQCQDISQYIENKIPVINIPV
NCTC8325 VIVVLHSTHLSGAGNGIKSFYKTVFNNLTRYKAIVVSTEKQCQDISQYIENKIPVINIPV
Newman VIVVLHSTHLSGAGNGIKSFYKTVFNNLTRYKAIVVSTEKQCQDISQYIENKIPVINIPV
USA300_FPR3757 VIVVLHSTHLSGAGNGIKSFYKTVFNNLTRYKAIVVSTEKQCQDISQYIENKIPVINIPV
*:**********:**************************:********************
COL GYVANLKYQFDINQKEKNHIISIARLVENKQIKHQIEVIKQLVTKHPNIQLNIYGHGNGL
N315 GYVANLKYQFDINQKEKNHIISIARLVENKQIKHQIEVIKQLVTKHPNIQLNIYGHGNGL
NCTC8325 GYVANLKYQFDINQKEKNHIISIARLVENKQIKHQIEVIKQLVTKHPNIQLNIYGHGNGL
Newman GYVANLKYQFDINQKEKNHIISIARLVENKQIKHQIEVIKQLVTKHPNIQLNIYGHGNGL
USA300_FPR3757 GYVANLKYQFDINQKEKNHIISIARLVENKQIKHQIEVIKQLVTKHPNIQLNIYGHGNGL
************************************************************
COL SEYRQLVEDYHLSEHVKFHGFKTHINEEIAKAELMLSTSKMEGFGLAILESLSVGTPVIS
N315 SEYRQLVEDYHLSEHVKFHGFKTHINEEIAKAELMLSTSKMEGFGLAILESLSVGTPVIS
NCTC8325 SEYRQLVEDYHLSEHVKFHGFKTHINEEIAKAELMLSTSKMEGFGLAILESLSVGTPVIS
Newman SEYRQLVEDYHLSEHVKFHGFKTHINEEIAKAELMLSTSKMEGFGLAILESLSVGTPVIS
USA300_FPR3757 SEYRQLVEDYHLSEHVKFHGFKTHINEEIAKAELMLSTSKMEGFGLAILESLSVGTPVIS
************************************************************
COL YDVDYGPSELIQDGFNGYLVPQGDINQMVEKVDQLLNNTQKLQQFSINSIESAQQYNATT
N315 YDIDYGPSELIQDGFNGYLVPKGDINQMVEKVDQLLNNTQKLQQFSINSIESAQQYNATT
NCTC8325 YDVDYGPSELIQDGFNGYLVPQGDINQMVEKVDQLLNNTQKLQQFSINSIESAQQYNATT
Newman YDVDYGPSELIQDGFNGYLVPQGDINQMVEKVDQLLNNTQKLQQFSINSIESAQQYNATT
USA300_FPR3757 YDVDYGPSELIQDGFNGYLVPQGDINQMVEKVDQLLNNTQKLQQFSINSIESAQQYNATT
**:******************:**************************************
COL ISTKWQNILN
N315 ISTKWQNILN
NCTC8325 ISTKWQNILN
Newman ISTKWQNILN
USA300_FPR3757 ISTKWQNILN
**********
- ↑ Dong Gyun Kim, Inwha Baek, Yeon Lee, Hyerry Kim, Jin Young Kim, Geul Bang, Sunghwan Kim, Hye Jin Yoon, Byung Woo Han, Se Won Suh, Hyoun Sook Kim
Structural basis for SdgB- and SdgA-mediated glycosylation of staphylococcal adhesive proteins.
Acta Crystallogr D Struct Biol: 2021, 77(Pt 11);1460-1474
[PubMed:34726173] [WorldCat.org] [DOI] (I p)Wouter L W Hazenbos, Kimberly K Kajihara, Richard Vandlen, J Hiroshi Morisaki, Sophie M Lehar, Mark J Kwakkenbos, Tim Beaumont, Arjen Q Bakker, Qui Phung, Lee R Swem, Satish Ramakrishnan, Janice Kim, Min Xu, Ishita M Shah, Binh An Diep, Tao Sai, Andrew Sebrell, Yana Khalfin, Angela Oh, Chris Koth, S Jack Lin, Byoung-Chul Lee, Magnus Strandh, Klaus Koefoed, Peter S Andersen, Hergen Spits, Eric J Brown, Man-Wah Tan, Sanjeev Mariathasan
Novel staphylococcal glycosyltransferases SdgA and SdgB mediate immunogenicity and protection of virulence-associated cell wall proteins.
PLoS Pathog: 2013, 9(10);e1003653
[PubMed:24130480] [WorldCat.org] [DOI] (I p)