PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002449000
• symbol^?: —
• synonym:
• description^?: DUF443 domain-containing protein

  descriptions from strain specific annotations:

  • DUF443 domain-containing protein
  • staphylococcus aureus paralogous family
• strand^?: +
• coordinates^?: 2961040..2964604
• synteny block^?: BlockID0016870
• occurrence^?: in 61% of 33 strains

⊟Orthologs

COL:
SACOL0649
N315:
SA0554
NCTC8325:
SAOUHSC_00592
Newman:
NWMN_0565
USA300_FPR3757:
SAUSA300_0584
04-02981:
SA2981_0574
08BA02176:
C248_0677
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
ECTR2_550
ED133:
—
ED98:
SAAV_0561
HO 5096 0412:
—
JH1:
SaurJH1_0635
JH9:
SaurJH9_0620
JKD6008:
SAA6008_00610
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS0562
Mu3:
SAHV_0595
Mu50:
SAV0597
MW2:
MW0557
RF122:
—
ST398:
SAPIG0674
T0131:
—
TCH60:
—
TW20:
SATW20_06710
USA300_TCH1516:
USA300HOU_0598
VC40:
SAVC_02595

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             METLLCESKVINKNPKYRIIKYDSEYLMIDLASNWIVFFFPFINWLIPKTYVKITKNDYE
  N315            ---MLCESKVINKNPKYRIIKYESEYLMIDLASNWIVFFFPFINWLIPKTYVKITKNDYE
  NCTC8325        METLLCESKVINKNPKYRIIKYDSEYLMIDLASNWIVFFFPFINWLIPKTYVKITKNDYE
  Newman          METLLCESKVINKNPKYRIIKYDSEYLMIDLASNWIVFFFPFINWLIPKTYVKITKNDYE
  USA300_FPR3757  METLLCESKVINKNPKYRIIKYDSEYLMIDLASNWIVFFFPFINWLIPKTYVKITKNDYE
                     :******************:*************************************
  
  COL             KLNIVKPVKNKSIGWTIFAGIVLLGGTVRRNTYLFDFQLEELIVWSSCFIGFLEIIFFYC
  N315            KLNIVKPVKNKSIGWTIFAGIVLLGGTVRRNTYLFDFQLEKLIVWSSCFIGFLGVIFFYC
  NCTC8325        KLNIVKPVKNKSIGWTIFAGIVLLGGTVRRNTYLFDFQLEELIVWSSCFIGFLEIIFFYC
  Newman          KLNIVKPVKNKSIGWTIFAGIVLLGGTVRRNTYLFDFQLEELIVWSSCFIGFLEIIFFYC
  USA300_FPR3757  KLNIVKPVKNKSIGWTIFAGIVLLGGTVRRNTYLFDFQLEELIVWSSCFIGFLEIIFFYC
                  ****************************************:************ :*****
  
  COL             YLNKKLTLNIYNESKNNELKLRLLPSFKNICFTIFYYLFTGFMSYGAFYLLVFENVQNLI
  N315            YLNKKLTLNVYKENKNNELKLRLLPSFKNMCFTIFYYLFTGFMSYGAFYLLVFENVQNLI
  NCTC8325        YLNKKLTLNIYNESKNNELKLRLLPSFKNICFTIFYYLFTGFMSYGAFYLLVFENVQNLI
  Newman          YLNKKLTLNIYNESKNNELKLRLLPSFKNICFTIFYYLFTGFMSYGAFYLLVFENVQNLI
  USA300_FPR3757  YLNKKLTLNIYNESKNNELKLRLLPSFKNICFTIFYYLFTGFMSYGAFYLLVFENVQNLI
                  *********:*:*.***************:******************************
  
  COL             LYVSWLFMTMLFMFMNMHSIIDKKVHIFLKSNK
  N315            LYISWLFMTMLFMLMNMHSIIDKKVHIFLKSNK
  NCTC8325        LYVSWLFMTMLFMFMNMHSIIDKKVHIFLKSNK
  Newman          LYVSWLFMTMLFMFMNMHSIIDKKVHIFLKSNK
  USA300_FPR3757  LYVSWLFMTMLFMFMNMHSIIDKKVHIFLKSNK
                  **:**********:*******************