PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002458000
• symbol^?: —
• synonym:
• description^?: DUF443 domain-containing protein

  descriptions from strain specific annotations:

  • DUF443 domain-containing protein
  • pseudogene
• strand^?: +
• coordinates^?: 2965146..2965740
• synteny block^?: BlockID0016950
• occurrence^?: in 36% of 33 strains

⊟Orthologs

COL:
SACOL0648
N315:
—
NCTC8325:
SAOUHSC_00591
Newman:
NWMN_0564
USA300_FPR3757:
SAUSA300_0583
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
RSAU_000555
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
SAA6008_00609
JKD6159:
—
LGA251:
—
M013:
M013TW_0588
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS0560
Mu3:
—
Mu50:
—
MW2:
MW0556
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
SATW20_06700
USA300_TCH1516:
USA300HOU_0597
VC40:
SAVC_02590

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MLCESKIINKNPKYRIIKYNDEYLMIDIISTWISLFFPFINWFIPKRYVKISREEFENLN
  NCTC8325        MLCESKIINKNPKYRIIKYNDEYLMIDIISTWISLFFPFINWFIPKRYVKISREEFENLN
  Newman          MLCESKIINKNPKYRIIKYNDEYLMIDIISTWISLFFPFINWFIPKRYVKISREEFENLN
  USA300_FPR3757  MLCESKIINKNPKYRIIKYNDEYLMIDIISTWISLFFPFINWFIPKRYVKISREEFENLN
                  ************************************************************
  
  COL             IVKPAKKNVFWPVAGISTLFAVTLRKYTHLLDTQLDRKLVIAICCITFIGILTFYVRLIK
  NCTC8325        IVKPAKKNVFWPVAGISTLFAVTLRKYTHLLDTQLDRKLVIAICCITFIGILTFYVRLIK
  Newman          IVKPAKKNVFWPVAGISTLFAVTLRKYTHLLDTQLDRKLVIAICCITFIGILTFYVRLIK
  USA300_FPR3757  IVKPAKKNVFWPVAGISTLFAVTLRKYTHLLDTQLDRKLVIAICCITFIGILTFYVRLIK
                  ************************************************************
  
  COL             KSSLNIYNTKNKRSKIILIPTLKNFCLTLFRYAFFILWTVIFSYALLSMSYQNIIVYFAW
  NCTC8325        KSSLNIYNTKNKRSKIILIPTLKNFCLTLFRYAFFILWTVIFSYALLSMSYQNIIVYFAW
  Newman          KSSLNIYNTKNKRSKIILIPTLKNFCLTLFRYAFFILWTVIFSYALLSMSYQNIIVYFAW
  USA300_FPR3757  KSSLNIYNTKNKRSKIILIPTLKNFCLTLFRYAFFILWTVIFSYALLSMSYQNIIVYFAW
                  ************************************************************
  
  COL             ITAIMGFFLVNIALIIDKNIHVILKN
  NCTC8325        ITAIMGFFLVNIALIIDKNIHVILKN
  Newman          ITAIMGFFLVNIALIIDKNIHVILKN
  USA300_FPR3757  ITAIMGFFLVNIALIIDKNIHVILKN
                  **************************