Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN002475000
- symbol?: —
- synonym:
- description?: endonuclease III domain-containing protein
- endonuclease III domain-containing protein
- endonuclease III
- DNA repair endonuclease III, putative
- putative endonuclease III
- deoxyribonuclease (pyrimidine dimer)
- DNA-lyase
- DNA repair endonuclease
- endonuclease III, putative
- endonuclease III domain protein
- HhH-GPD family protein
- hhH-GPD superbase excision DNA repair family protein
- hhH-GPD superfamily base excision DNA repair family protein
- putative DNA repair protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2991264..2992074
- synteny block?: BlockID0017110
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0585
08BA02176:
C248_0692
11819-97:
MS7_0661
6850:
RSAU_000565
71193:
ST398NM01_0689
ECT-R 2:
ECTR2_561
ED133:
SAOV_0644
ED98:
SAAV_0572
HO 5096 0412:
SAEMRSA15_05360
JH1:
SaurJH1_0646
JH9:
SaurJH9_0631
JKD6008:
SAA6008_00626
JKD6159:
SAA6159_00565
LGA251:
SARLGA251_05440
M013:
M013TW_0597
MRSA252:
SAR0617
MSHR1132:
SAMSHR1132_05520
MSSA476:
SAS0576
Mu3:
SAHV_0606
Mu50:
SAV0608
MW2:
MW0572
RF122:
SAB0561
ST398:
SAPIG0689
T0131:
SAT0131_00675
TCH60:
HMPREF0772_12578
TW20:
SATW20_06850
USA300_TCH1516:
USA300HOU_0614
VC40:
SAVC_02685
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MLGTDELYKVLYEHLGPQFWWPADNDIEMMLGAILVQNTRWRNAEIALNQIKEHTHFNPN
N315 MLGTDELYKLLYRHMGPQNWWPADNDIELMLGAILVQNTRWRNAEIALNQIKEHTHFNPN
NCTC8325 MLGTDELYKVLYEHLGPQFWWPADNDIEMMLGAILVQNTRWRNAEIALNQIKEHTHFNPN
Newman MLGTDELYKVLYEHLGPQFWWPADNDIEMMLGAILVQNTRWRNAEIALNQIKEHTHFNPN
USA300_FPR3757 MLGTDELYKVLYEHLGPQFWWPADNDIEMMLGAILVQNTRWRNAEIALNQIKEHTHFNPN
*********:**.*:*** *********:*******************************
COL HILELPIETLQSLIHSSGFYKSKSLTIKTLLTWLARHHFNYQEINERYKGGLRKELLSLK
N315 HILELPIETLQSLIHSSGFYKSKTLTIKTLLTWLARHHFNYQEINERYKGGLRKELLSLK
NCTC8325 HILELPIETLQSLIHSSGFYKSKSLTIKTLLTWLARHHFNYQEINERYKGGLRKELLSLK
Newman HILELPIETLQSLIHSSGFYKSKSLTIKTLLTWLARHHFNYQEINERYKGGLRKELLSLK
USA300_FPR3757 HILELPIETLQSLIHSSGFYKSKSLTIKTLLTWLARHHFNYQEINERYKGGLRKELLSLK
***********************:************************************
COL GIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENTKNYDQLKKVVTLPNHFTNQDAN
N315 GIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENTKNYDQLKKVVTLPNHFTNQDAN
NCTC8325 GIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENTKNYDQLKKVVTLPNHFTNQDAN
Newman GIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENTKNYDQLKKVVTLPNHFTNQDAN
USA300_FPR3757 GIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENTKNYDQLKKVVTLPNHFTNQDAN
************************************************************
COL EFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
N315 EFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
NCTC8325 EFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
Newman EFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
USA300_FPR3757 EFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
*******************************