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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002488000
- symbol?: —
- synonym:
- description?: membrane protein
- membrane protein
- DMT family transporter
- Integral membrane protein
- membrane spanning protein
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3003689..3004634
- synteny block?: BlockID0017240
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0594
08BA02176:
C248_0701
11819-97:
MS7_0670
6850:
RSAU_000574
71193:
ST398NM01_0698
ECT-R 2:
ECTR2_570
ED133:
SAOV_0654c
ED98:
SAAV_0582
HO 5096 0412:
SAEMRSA15_05450
JH1:
SaurJH1_0656
JH9:
SaurJH9_0641
JKD6008:
SAA6008_00635
JKD6159:
SAA6159_00574
LGA251:
SARLGA251_05530
M013:
M013TW_0606
MRSA252:
SAR0626
MSHR1132:
SAMSHR1132_05610
MSSA476:
SAS0585
Mu3:
SAHV_0615
Mu50:
SAV0617
MW2:
MW0581
RF122:
SAB0570c
ST398:
SAPIG0698
T0131:
SAT0131_00685
TCH60:
HMPREF0772_12569
TW20:
SATW20_06940
USA300_TCH1516:
USA300HOU_0624
VC40:
SAVC_02730
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL ------------MLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIILNIIINPEVFT
N315 MLLFYIIGVLVGMLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIILNIIINPEVFT
NCTC8325 ------------MLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIILNIIINPEVFT
Newman MLLFYIIGVLVGMLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIILNIIINPEVFT
USA300_FPR3757 ------------MLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIILNIIINPEVFT
************************************************
COL IHFYNNQSFNYTWVVGGLLGVSFLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTFGLF
N315 IHFYNNQSFNYTWVVGGLLGVSFLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTFGLF
NCTC8325 IHFYNNQSFNYTWVVGGLLGVSFLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTFGLF
Newman IHFYNNQSFNYTWVVGGLLGVSFLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTFGLF
USA300_FPR3757 IHFYNNQSFNYTWVVGGLLGVSFLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTFGLF
************************************************************
COL GATIHDFNLIKAIGVLLLIVGIVIMNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTT
N315 GATIHDFNLIKAIGVLLLIVGIVIMNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTT
NCTC8325 GATIHDFNLIKAIGVLLLIVGIVIMNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTT
Newman GATIHDFNLIKAIGVLLLIVGIVIMNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTT
USA300_FPR3757 GATIHDFNLIKAIGVLLLIVGIVIMNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTT
************************************************************
COL INSALASHTHSPAFASLVSFTIGSIALLILTAIFNRSLKLKTSHLKFGKLKPIYFTGGIL
N315 INSALASHTHSPAFASLVSFTIGSITLLILTAIFNSSLKLKTSHLKFGKLKPIYFTGGIL
NCTC8325 INSALASHTHSPAFASLVSFTIGSIALLILTAIFNRSLKLKTSHLKFGKLKPIYFTGGIL
Newman INSALASHTHSPAFASLVSFTIGSIALLILTAIFNRSLKLKTSHLKFGKLKPIYFTGGIL
USA300_FPR3757 INSALASHTHSPAFASLVSFTIGSIALLILTAIFNRSLKLKTSHLKFGKLKPIYFTGGIL
*************************:********* ************************
COL GMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFGSPKIAMTSRKTIGLLCIL
N315 GMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFGSPKIAMTSRKTIGLLCIL
NCTC8325 GMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFGSPKIAMTSRKTIGLLCIL
Newman GMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFGSPKIAMTSRKTIGLLCIL
USA300_FPR3757 GMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFGSPKIAMTSRKTIGLLCIL
************************************************************
COL TGIILLRLF
N315 TGIILLRLF
NCTC8325 TGIILLRLF
Newman TGIILLRLF
USA300_FPR3757 TGIILLRLF
*********